Protein Info for QEN71_RS15030 in Paraburkholderia sabiae LMG 24235

Annotation: LPS-assembly protein LptD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 751 PF04453: LptD" amino acids 282 to 653 (372 residues), 312 bits, see alignment E=3.7e-97

Best Hits

Swiss-Prot: 55% identical to LPTD_PARXL: LPS-assembly protein LptD (lptD) from Paraburkholderia xenovorans (strain LB400)

KEGG orthology group: None (inferred from 87% identity to bph:Bphy_3482)

Predicted SEED Role

"Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (751 amino acids)

>QEN71_RS15030 LPS-assembly protein LptD (Paraburkholderia sabiae LMG 24235)
MPGYAQLAGDAASAERLSDAWSLRLAPQLAETPNQPDVKPITFALGDNVTGTVDTDVSLK
GDAELRRYGFVVKGDALHYDVDRDTADAVGHVGIVSKGDEFNGPYGQLHVDANEGFIAQP
KYRFYLSGGWGSGARADLLDNERSKIVDGTYSTCACETNPAWYIRASQFTMDSGADEGVA
HNGVLYFQNIPLLASPWLSFPLDGARRSGLLSPTWSMSSKNGVDITVPYYFNIAPNYDLT
IAPRYMSKRGEMLSADYRYLTSTSAGSLSIAWLPNDMITHERRYSIDLDHVWNIGSGFSA
YVNYNRVSDANVSTDLGSGSAFPTSSTTLYQQEAGVRYNSGPWSVLAREQHWQSFSSDTT
YNREPQVNVHYNRYDVGGFDYGFEADATRFTLSSDDATQGTRFVFNPFVSYPIVRPGWFF
TPTIKWHFASYDLTSIASDAPAGQPRNVNVSIPTLTLDSGMTFERAVSLFGRSYIQTLEP
RLFYVYTPYRDQTYVPLFDTTEADFGLGELFRDNAFVGNDRVSDANRVTAALTSRFIDAA
TGDERARFVIAQRYDFRQPRVTLYDTESTANVARTSLILGSSLKVATDTNIENALQYSQA
NNYLTQGSVGLAWSPATAHVFNVAYRYTRANTTLDYQPVNQIIVSGQWPLMKNVASVARV
NYDMSTHRLIAGLLGVQYDAQCWSLALAFEKYTNSTGSTTPSTGTRVMMQLQLKGLSRSD
RGLLDQFKADVPGYSSAPADDAPVSRFSDYQ