Protein Info for QEN71_RS14390 in Paraburkholderia sabiae LMG 24235

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 PF13432: TPR_16" amino acids 18 to 74 (57 residues), 25.7 bits, see alignment 1e-08 amino acids 85 to 145 (61 residues), 16.9 bits, see alignment E=5.9e-06 amino acids 187 to 241 (55 residues), 34.3 bits, see alignment 2.1e-11 amino acids 230 to 267 (38 residues), 31.2 bits, see alignment 1.9e-10 PF14559: TPR_19" amino acids 23 to 78 (56 residues), 29.4 bits, see alignment 6.6e-10 amino acids 227 to 267 (41 residues), 28.2 bits, see alignment 1.6e-09 PF07719: TPR_2" amino acids 113 to 144 (32 residues), 24.7 bits, see alignment (E = 1.4e-08) amino acids 181 to 213 (33 residues), 29.1 bits, see alignment (E = 5.2e-10) amino acids 215 to 247 (33 residues), 29.9 bits, see alignment (E = 2.9e-10) PF13374: TPR_10" amino acids 113 to 142 (30 residues), 16.9 bits, see alignment (E = 4.3e-06) PF13181: TPR_8" amino acids 113 to 145 (33 residues), 18.8 bits, see alignment (E = 1.1e-06) amino acids 181 to 213 (33 residues), 22 bits, see alignment (E = 1e-07) amino acids 215 to 247 (33 residues), 25.4 bits, see alignment (E = 8.6e-09) PF00515: TPR_1" amino acids 181 to 214 (34 residues), 33.9 bits, see alignment (E = 1.6e-11) amino acids 215 to 247 (33 residues), 37.9 bits, see alignment (E = 8.5e-13) PF13431: TPR_17" amino acids 204 to 236 (33 residues), 25.6 bits, see alignment (E = 8.2e-09) PF13176: TPR_7" amino acids 217 to 248 (32 residues), 16.6 bits, see alignment (E = 5.2e-06) PF13414: TPR_11" amino acids 227 to 263 (37 residues), 36.8 bits, see alignment 2.1e-12

Best Hits

KEGG orthology group: None (inferred from 90% identity to bph:Bphy_3808)

Predicted SEED Role

"FOG: TPR repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (572 amino acids)

>QEN71_RS14390 tetratricopeptide repeat protein (Paraburkholderia sabiae LMG 24235)
MSKTQNPQRQIDAMLQQAVAMQQNGAHPEAEELYREILALRPKHFDALQLLGALSLQAGR
LDEGIELLKKAIAINGMQAPLHSNLAYAYNAQRRFNEGLASANRALALQANFADALNNRG
NALAGLERPAEAFASFEKAIALQPALAQAWNNCACVLRDLDRPDDALAACDQAIALQTGY
AEAWSNRANALSDLNRPQDAQASYQRALELAPSFADAWSNLGLTQIDLKQHEDALQSYER
ALALNPDQAEAHWNRALCLLQMGRLDEGWQEYEWRWQRHRMQGAQRQFAQPLWLGQFPLD
GKTILLHAEQGLGDTLQFCRYVPLVAAMGAKVILEVPQELMRLLQTLDGVAGLVEQGQPL
PAFDCHAPLLSLPLAFGTRVESIPADTPYLFPDESDTKRWSERLASDVSRALKVGLVWAG
GNRPHVAELRKTDARRSIALDTLAPILDIPHVQFYSLQKGPAAQQLSGNPELAGRIVDYT
DEFADFADTAAFVCNLDLVISVDTAVAHLAGATGTPVWIMNRFDTCWRWLLDRTDSPWYP
RARLFRQPALGDWNSVIADVHDALAAEASAAG