Protein Info for QEN71_RS13815 in Paraburkholderia sabiae LMG 24235

Annotation: oligosaccharide flippase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 9 to 31 (23 residues), see Phobius details amino acids 43 to 65 (23 residues), see Phobius details amino acids 86 to 103 (18 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details amino acids 171 to 193 (23 residues), see Phobius details amino acids 214 to 236 (23 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 292 to 315 (24 residues), see Phobius details amino acids 330 to 349 (20 residues), see Phobius details amino acids 356 to 377 (22 residues), see Phobius details amino acids 383 to 404 (22 residues), see Phobius details PF01943: Polysacc_synt" amino acids 9 to 272 (264 residues), 75 bits, see alignment E=1e-24 PF13440: Polysacc_synt_3" amino acids 33 to 322 (290 residues), 44 bits, see alignment E=2.7e-15 PF14667: Polysacc_synt_C" amino acids 326 to 406 (81 residues), 35.7 bits, see alignment E=1.4e-12

Best Hits

KEGG orthology group: None (inferred from 92% identity to bph:Bphy_3729)

Predicted SEED Role

"Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (436 amino acids)

>QEN71_RS13815 oligosaccharide flippase family protein (Paraburkholderia sabiae LMG 24235)
MDGKKSANVIVFVYGGYLMRYVYLIIVVPFYGRVLGVAEYGRVLAAMSLMNVIWMLASYG
FTFVGMREISKAQTNSECNSIYSLHVSARLALGVLGGCIGAIATYCSPTLSERPLIGFLA
TALGVVSALNLGWLYQGRHHFRTPIMIEVFGFAVSLGLVLCLVKGPADSVWVVASLLTAG
VLSLAISYGLATYQLGRPHLSFEGITDLVKGSTMLFCYSSGSVVLTASSTYLLTLLSTPA
QVGYFGAAERFATIGLALMGPASQVFIPTISRQLAQGDKAGAHATTRRGATLMLGYGLLV
FCGALTLSPFVLPLILGNAFTPSGHVLQCFAWMFPFAAFNEFAAFYVFVPRKKDRLLAIA
GAASGVLNLVAALYLAPRYGAEGMAFARVIGELSLSMMLLTVMIRQELITLVPGAGRAIA
MARVAWGARGGAGKDD