Protein Info for QEN71_RS13365 in Paraburkholderia sabiae LMG 24235

Annotation: branched-chain amino acid ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 PF13458: Peripla_BP_6" amino acids 25 to 363 (339 residues), 210.6 bits, see alignment E=8.3e-66 PF01094: ANF_receptor" amino acids 46 to 363 (318 residues), 125.6 bits, see alignment E=3.8e-40 PF13433: Peripla_BP_5" amino acids 145 to 349 (205 residues), 33.6 bits, see alignment E=3.5e-12

Best Hits

KEGG orthology group: None (inferred from 94% identity to bph:Bphy_3654)

Predicted SEED Role

"Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (380 amino acids)

>QEN71_RS13365 branched-chain amino acid ABC transporter substrate-binding protein (Paraburkholderia sabiae LMG 24235)
MGCDKKEQPSQHAAQSESGAVEEVVKIGHVGPLTGGSSHLGKDNENGARLAVEDINRTGL
VIGGHKVRLELDGEDDAADPKTGTQIAQKFVDEHVVAVIGHLNSGVSIPASRIYNDANIA
EISPSSTNPDYTKQGYKSAYRVVATDAQQGPALGGYALKSLGAKTIAVVDDATAYGKGLA
DEFAKAAQAGGARIVSREATNDKAADFRAILTSIKSAHPDVIMFGGMDSTVGPFIRQAAA
LGLNAKVLSGDGACTEKVAELAGDAVNNLICSEASLAVSRMPKGAEFQKRFEARFNGPIL
FNAPFAYDAVYVIADAMRRANTTDAAKVLAALPATDYNGVIGRIAFDAHGDMKEGAITLY
HYQDKKKTLLDVVKYGGAST