Protein Info for QEN71_RS12965 in Paraburkholderia sabiae LMG 24235

Annotation: DUF3138 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 524 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF11336: DUF3138" amino acids 1 to 524 (524 residues), 956.4 bits, see alignment E=4.1e-292 PF07642: BBP2" amino acids 120 to 524 (405 residues), 58.6 bits, see alignment E=6.9e-20

Best Hits

KEGG orthology group: None (inferred from 88% identity to bxe:Bxe_B0936)

Predicted SEED Role

"Uncharacterized protein in putrescine utilization cluster"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (524 amino acids)

>QEN71_RS12965 DUF3138 family protein (Paraburkholderia sabiae LMG 24235)
MRKKLICLLVAGALPGAAFADSTSAQIKALQQQLNALQKEVKELRAQVASSPAATPARGT
AAAPALAAGPAIDISSPDYGKAPARLSNDDVTAMKQQIANQQLKVDSLEDAAQTGPIAGL
SVTGYIDPTYIYNRAQSSSSFLFANHESAYNYYNSTFGDLYLDIKKTFGVGPMAPSAEIT
LMPNRGNGITLLQNSHGEIGNNILNTAVVNVPLTGSTTFVAGLIPSFGGYEVQQSNQMLT
LTHNLLYDFSDPGSYVGVGANYTKGNWAWKFFLGNEQYRTYGAVTQTGTNALGDPITTSN
KIPTFTARADYTWSSALDIGGSINIGRQTLPSAVDATTGNVTYGVGGQAPSSGGTFFFGE
VDATYLLADVQYNAELDYGQQQNAAFNGGQAQWYGLSLLAHRKFNMPVVGRMGATLRYDL
LVNSKNGGGGGGIALNSNGMDVNNGFGIGADCLANSKANGGLGFECKGANRQDIALDLLF
FPTQQITVKVEYRHDWANQNVFLRNDGSYSKSNDLLATQFIYSF