Protein Info for QEN71_RS12470 in Paraburkholderia sabiae LMG 24235
Annotation: ABC transporter substrate-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 46% identical to ARGT_ECOLI: Lysine/arginine/ornithine-binding periplasmic protein (argT) from Escherichia coli (strain K12)
KEGG orthology group: None (inferred from 97% identity to bph:Bphy_3432)Predicted SEED Role
"Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)" in subsystem Arginine and Ornithine Degradation (TC 3.A.1.3.1)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (259 amino acids)
>QEN71_RS12470 ABC transporter substrate-binding protein (Paraburkholderia sabiae LMG 24235) MNLKLSFAAAVLAMTAGAACAQSSDTLRFGIEAAYPPFESKSASGQLEGFDVDVGNAVCA KLKMKCVWVENAFDGLIPALQARKFDVINSAMNITSKRKESIAFTPPIYIVPIVTIAKHG SGLKPDVKSLQGKHVGVLQGSSQEDFLKKHWATAGVQVESYQDQDQVYADLVAGRLDAAV QEAQTANDGFLNKPAGAGFEIVGEPLKDPSTLGEGTGFGLRKGDKALQAKIDGALAELKK DGTLTSLSQKYFKRDIIAK