Protein Info for QEN71_RS12305 in Paraburkholderia sabiae LMG 24235

Annotation: tyrosine-type recombinase/integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 PF00589: Phage_integrase" amino acids 404 to 532 (129 residues), 34.8 bits, see alignment E=1.5e-12

Best Hits

Predicted SEED Role

"Integrase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (551 amino acids)

>QEN71_RS12305 tyrosine-type recombinase/integrase (Paraburkholderia sabiae LMG 24235)
MTPADWVDAGVLPARRLPPAIDAALAYVSEVLGHPVYRCWTLADLKRVSPSLADAKRVHP
AVFALLLEHDAAIEYWAHGRLHLAPDGGAPAAEGVLAGVLRAHRRRFRYLPEGTGAAAHG
STAIHPGTNHPPGDAAGGPVIMGTADTLALVASRNQDPAALGAWLTRAGRFMNASTTNSL
GVADDAQALALFLRDRAQRSPHTLRGYRTELRRLIGWCEAHRRGPLSDLTREDLLAFRRA
LDQPGHSGNIAGAARAVTSGNAPAVHAPRSDAGRRRALAVISSLFRYWQKTGYLVVNPAV
ELSGDGAARMTWTPARILPAKLLMLCDAVTAGVRPPGVSPLVWARRCAIWSLYRFAGVRL
AELEWSAEQGLPRLSVDEAARKEVDTTAAVASVLPDPVGLAWTLHVHGKGGKVRAIPLPS
RCVPVLRDYRVLRGLPAEPAPFESIPLIHSEKRDALGHSGLYDEVKAVLHAAEQQVPPGD
AATRALIHAASTHWLRHGYARTLVVDYAVPLPVAQTLLGHASVQTTAAYARTDLTQLRDF
VEGSFPKIREN