Protein Info for QEN71_RS12005 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 37 to 54 (18 residues), see Phobius details amino acids 61 to 77 (17 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 112 to 131 (20 residues), see Phobius details amino acids 151 to 176 (26 residues), see Phobius details amino acids 197 to 221 (25 residues), see Phobius details amino acids 240 to 271 (32 residues), see Phobius details amino acids 276 to 300 (25 residues), see Phobius details PF02653: BPD_transp_2" amino acids 37 to 298 (262 residues), 113.3 bits, see alignment E=5.8e-37

Best Hits

KEGG orthology group: None (inferred from 52% identity to bam:Bamb_3331)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>QEN71_RS12005 ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MNILIQRAPWRLFLPIALLLIFSISNRDFVSLGNVYALLQSFALLGLVTLGLSLTMVAGE
FDLSVGSISAVAGLVLVKCGESHPILGIAAALAAGIAIGLANGGLTRTLRVSSLVTTLGS
MILLNGVAVWLEGGQVLAYNNFEEADLLDSAIAGILSTRSLITLGVFTLTGGMLAFTRVG
RDIRAAGSNRRAAEMAGANVSLALYVAFALSGALAALTGALTSISLSTASSRFGTDLVLQ
AATAAIVGGVTLSGGVGSPTGIALGALTFAILNNGLSLLGVPSATILLLNGGLLFIVLVS
NGRQIFPRLALRH