Protein Info for QEN71_RS11730 in Paraburkholderia sabiae LMG 24235

Annotation: IS110 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 transmembrane" amino acids 37 to 60 (24 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details amino acids 212 to 229 (18 residues), see Phobius details PF01548: DEDD_Tnp_IS110" amino acids 5 to 140 (136 residues), 55.9 bits, see alignment E=4.6e-19 PF02371: Transposase_20" amino acids 213 to 297 (85 residues), 62 bits, see alignment E=5.4e-21

Best Hits

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>QEN71_RS11730 IS110 family transposase (Paraburkholderia sabiae LMG 24235)
MNYSGIDLHSNNSVVSVIDETDRVVAEKRLPNDLTKILAFLAPWRAGMAGVVVESTFNWY
WLVDGLQTAGYVVHLANTTAIKKYDGLKHSGDETDARYLAHLLRLGILPVGTILPARLRE
VRDLARKRMQLVRSCTSHILAVENITARQYGTRITSNQVKRLDEHAVNQMGLPDNVALAV
RANIAVITTLRDQIAIVERRLRKEVARHPDYVLLTTVPGIGQTLATVIMLETGTIDRFAN
AGNFASYARCVDSQRMSNGKKKGEGNTRNGNPYLCWAFIEAANFAMHFSTEARRFYERKK
ARTNSVLARKALAHKLARACFHMLKERKPFDVTRCFA