Protein Info for QEN71_RS11410 in Paraburkholderia sabiae LMG 24235

Annotation: sugar ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 PF00005: ABC_tran" amino acids 33 to 182 (150 residues), 109.9 bits, see alignment E=1.6e-35 amino acids 284 to 436 (153 residues), 72.8 bits, see alignment E=4.6e-24

Best Hits

Swiss-Prot: 90% identical to RGMG1_BURCM: Putative ribose/galactose/methyl galactoside import ATP-binding protein 1 (Bamb_1228) from Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)

KEGG orthology group: K10441, ribose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 91% identity to bpy:Bphyt_5471)

Predicted SEED Role

"Possible fucose ABC transporter, ATP-binding component"

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (510 amino acids)

>QEN71_RS11410 sugar ABC transporter ATP-binding protein (Paraburkholderia sabiae LMG 24235)
MHGGAAVSFAPPAEEDLLRLRGVGKRFPGVVALDGIDLDLRAGEVHAVCGENGAGKSTLM
KIISGQYRADEGTVCYRGAPVQFASTSEAQAAGIAIIHQELNLVPHLSVAENIYLAREPK
RGPFVDYRTLNANARQCLQRIGLNVSPVTLVGALSIAQQQMVEIAKALSLDARVLIMDEP
TSSLTESETVQLFRIIRELRADGVAILYISHRLDEMAEIVDRVTVLRDGRHIATSDFAST
SINEIVARMVGRPLDDAYPPRQSTPTGELLLRVRDLQRTGTFGPVSFELRKGEILGFAGL
MGAGRTEVARAIFGADRPDSGSILLGDTPVSIGSPREAIRHGIAYLSEDRKKDGLALSMP
VSANITLANVRAISSRGFLRFSEEAAVAGRYVRELGIRTPTVRQIAKNLSGGNQQKIVIS
KWLYRGSRILFFDEPTRGIDVGAKYAIYGLMDRLASDGVGVVLISSELPELLGMTDRIAV
FHEGRITAVLETSQTSQEEILHHASGRSHA