Protein Info for QEN71_RS10715 in Paraburkholderia sabiae LMG 24235

Annotation: ATP-dependent DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 757 PF06733: DEAD_2" amino acids 270 to 389 (120 residues), 51.1 bits, see alignment E=1.9e-17 PF13307: Helicase_C_2" amino acids 589 to 752 (164 residues), 134.4 bits, see alignment E=6.4e-43

Best Hits

KEGG orthology group: None (inferred from 92% identity to bph:Bphy_5309)

Predicted SEED Role

"DinG family ATP-dependent helicase CPE1197" in subsystem DNA repair, bacterial DinG and relatives

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (757 amino acids)

>QEN71_RS10715 ATP-dependent DNA helicase (Paraburkholderia sabiae LMG 24235)
MTYVVAVRTLCEFTARRGDLDLRFTPAPSALEGIAGHQVVTARRASGYETEITLTGSHHG
LTVRGRADGYDPALNRLEEIKTHRGDLERMPANHRALHWAQALVYGHLLCEARGLVELDV
ALVYFDIGEQKETVLTEQHTAASLRAFFEDQCGRFVAWAAREEVHRDARNAALNALRFPY
GEFRSGQRELSVAVFRAARDGRCLMAQAPTGIGKTLGTIFPLLKACGADHLDRVFFLTAK
TPGRALALDAIESLHRSESVLPLRTLELVARDKACEHPDKSCDGESCPLARGFYDRLPAA
RDTALQARTLDRAAVREAALAHDVCPYYVAQEMTRWCDVVIGDYNYYFDGSAMLYALTQL
NGWRVAVLADEAHNLPDRARRMYSATLDQAAFRGARHIVPAALKKPFDRLNREWNALNRE
RNVAYEVLPDVPAKLQSAVQNLIASIGDQLAEAPHSVDENALRFYFDALHFMSLVEEFGD
HSIVDVTLESQHGASRAKPATSICVRNVIPAPFLKPRYAAARTTIVFSGTLSPQHFYRDM
LGLPDDTGWLDVEGPFRAEQLEVRVAHRVSTRWRDRERSLEPIVDLIAQQYSERPGNYLG
FLSSFDYLQRVADSMGERHPHVPIWTQAPRMDEAARDAFLARFAAGGAGVGFAVLGGAFS
EGIDLVGERLIGAFIATLGLPQMNDVNEQMRRTFDAQFGNGYDYAYLYPGLQKVVQAAGR
VIRTERDEGVVHLIDDRYQRADVRRLLPRWWKVGTTQ