Protein Info for QEN71_RS10640 in Paraburkholderia sabiae LMG 24235

Annotation: type II secretion system F family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 267 to 287 (21 residues), see Phobius details amino acids 301 to 318 (18 residues), see Phobius details PF00482: T2SSF" amino acids 159 to 283 (125 residues), 72.5 bits, see alignment E=1.6e-24

Best Hits

KEGG orthology group: K12510, tight adherence protein B (inferred from 87% identity to bph:Bphy_5325)

Predicted SEED Role

"Flp pilus assembly protein TadB" in subsystem Widespread colonization island

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>QEN71_RS10640 type II secretion system F family protein (Paraburkholderia sabiae LMG 24235)
MDTTLLAFAVLGFVAIVLMIEGVYLYWNSRHGPAVKRMDARIRAMSAGGHVSDEQMSILK
QRLLSESPTLTRMLMRMPRVHLLDLYLQQSGLSWSVGRFVGYSTMSGCVGLVLGMGGMNL
PFAVALAVAGAAALLPLVYLRGKRAKRIVRLERQLPDAADLIARALRAGHSFPAALGMVA
DELPNPLGGEFRIAFDEINYGVSMNDALMNLVSRVPVDDVRYFVIAVLIQREAGGNLAEI
LGNIASIIRDRLKLLAKVRVLSAEGRLSAWILGVLPFIVLGALSVLNPGYCKVFWEDETG
QKIAAVALTMMLFGMLWLRRTVRIRV