Protein Info for QEN71_RS10510 in Paraburkholderia sabiae LMG 24235

Annotation: alpha/beta fold hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 PF12697: Abhydrolase_6" amino acids 50 to 268 (219 residues), 46.1 bits, see alignment E=3e-15 PF00561: Abhydrolase_1" amino acids 51 to 265 (215 residues), 54.3 bits, see alignment E=4.8e-18 PF12146: Hydrolase_4" amino acids 66 to 252 (187 residues), 30.8 bits, see alignment E=5.5e-11 PF04545: Sigma70_r4" amino acids 295 to 339 (45 residues), 24.9 bits, see alignment 3.4e-09 PF08281: Sigma70_r4_2" amino acids 295 to 339 (45 residues), 33.3 bits, see alignment 9.3e-12 PF00196: GerE" amino acids 296 to 351 (56 residues), 75.8 bits, see alignment E=4.6e-25

Best Hits

KEGG orthology group: None (inferred from 95% identity to bph:Bphy_5343)

Predicted SEED Role

"transcriptional regulator, CadC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (361 amino acids)

>QEN71_RS10510 alpha/beta fold hydrolase (Paraburkholderia sabiae LMG 24235)
MSSIAPKCRQQIRLCTAHDGARIAYATYGSGPPIVKAANWLSHLEFDLASPVWSHMLAEL
CREHTLIRYDQRGCGLSDHDVADISFDAWKHDLIAVIDASGVDRFALLGISQGASIAITY
AVAFPERVSHLILHGGYARGRLVRSRTEQARDEAETLAKLAEIGWGQHNPAFRQFFTTQF
IPGGTPQQHHWFNELERISTTPHNAARIMRVFNSIDVVDLLPHVQCPTLVMHAVRDARVP
FEESRLLASLIPNARFVPLESDNHLTLECESAWQRWRDEVRAFLPPIRHVDPVFSALTRR
EREIVELIASGRDNAQIAARLGLSEKTVRNHITNIFAKLEVESRAQAIVMARKAGFDAPA
V