Protein Info for QEN71_RS09945 in Paraburkholderia sabiae LMG 24235

Annotation: PAS domain S-box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 814 TIGR00229: PAS domain S-box protein" amino acids 44 to 167 (124 residues), 64.9 bits, see alignment E=3.9e-22 amino acids 171 to 296 (126 residues), 75.6 bits, see alignment E=1.9e-25 PF00989: PAS" amino acids 59 to 158 (100 residues), 40.9 bits, see alignment E=5.6e-14 amino acids 175 to 287 (113 residues), 43.6 bits, see alignment E=8.4e-15 PF08448: PAS_4" amino acids 60 to 163 (104 residues), 25.7 bits, see alignment E=3.3e-09 amino acids 187 to 292 (106 residues), 36.9 bits, see alignment E=1.2e-12 PF13426: PAS_9" amino acids 63 to 161 (99 residues), 44.1 bits, see alignment E=6.3e-15 amino acids 187 to 289 (103 residues), 57 bits, see alignment E=6.1e-19 PF08447: PAS_3" amino acids 198 to 282 (85 residues), 29.3 bits, see alignment E=2.6e-10 PF02518: HATPase_c" amino acids 421 to 540 (120 residues), 70.1 bits, see alignment E=6.5e-23 PF00072: Response_reg" amino acids 567 to 678 (112 residues), 41.5 bits, see alignment E=4.1e-14 amino acids 703 to 810 (108 residues), 47.2 bits, see alignment E=7e-16

Best Hits

KEGG orthology group: None (inferred from 84% identity to bph:Bphy_5407)

Predicted SEED Role

"sensory box histidine kinase/response regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (814 amino acids)

>QEN71_RS09945 PAS domain S-box protein (Paraburkholderia sabiae LMG 24235)
MSDDDKDIGSVVRREAGQDTQPPHPRKEQDAAASGMDTHVGDFSSEWLRLWAESTTDYSI
YALAPDGTIISWNRGGETIQGYTSDEILGQHVRVTYPDEDQRSGHPEAALQRAHESGRDE
TEGWRVRKDGTLFWANVIVTALYSPGGELLGYGRVERDISDKKNATDAALESDRRFRLLV
QGVNDYAIFMLSPEGCVTNWNPGARRIKGYTDEQIIGSHFSCFYTPEDAAAGVPKRGLET
AAREGRWEAEGWRVRRDGSRFWAHVVIDAIRDESGTLIGFAKITRDITERRQAAELLDQT
RNALFQSQKMEALGKLTGGVAHDFNNVLQVLRGNLELLGARHDDAWSRSRIGRAIEAVER
GSKLASQLLAFGRRQALQPVPSSLGDVLHNMEDLLRRALGERVRVRIHEARGGELWNVLV
DTHQLENVLLNLAINSRDAMPEGGMLTFGLSNAVLDAQTAVTAQIDPGEYVKMTVTDTGT
GMSADVAERAFDPFFTTKPEGQGTGLGLSMAYGFVLQSGGHIELASTPGVGTTVTIYLPR
STDTPVARAASPAEPQTGDDLRGDETVLVVEDDRRVQLTVVDLLSQLGYGVLTANDATEA
LTVLRSGAKVDLLFSDVVMPGPLLSPEMARQALLMRPSLKVLFTSGHTRDTMGLDAQLRR
GADLLQKPYSRMQLARKIREVFDGTRHATQNEALRGASPVLQILIVEDDRDARDALCELL
AMLGHTFEAVGNAEEALQRLQLHPFDVLLTDLTLPGMSGFDLARAAIALRAAQRVVFSSG
LDAQTSDTTLPFEWTALRKPYSLDQLKAALDAQA