Protein Info for QEN71_RS09915 in Paraburkholderia sabiae LMG 24235

Annotation: VTT domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 735 transmembrane" amino acids 520 to 539 (20 residues), see Phobius details amino acids 566 to 596 (31 residues), see Phobius details amino acids 598 to 621 (24 residues), see Phobius details amino acids 644 to 666 (23 residues), see Phobius details amino acids 676 to 699 (24 residues), see Phobius details amino acids 707 to 731 (25 residues), see Phobius details PF00614: PLDc" amino acids 161 to 185 (25 residues), 28.6 bits, see alignment (E = 1.6e-10) amino acids 380 to 406 (27 residues), 27.7 bits, see alignment (E = 3e-10) PF13091: PLDc_2" amino acids 294 to 420 (127 residues), 51 bits, see alignment E=1.9e-17 PF09335: SNARE_assoc" amino acids 580 to 694 (115 residues), 89.7 bits, see alignment E=3.2e-29

Best Hits

KEGG orthology group: None (inferred from 87% identity to bph:Bphy_5412)

Predicted SEED Role

"Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (735 amino acids)

>QEN71_RS09915 VTT domain-containing protein (Paraburkholderia sabiae LMG 24235)
MPMTQNLTRTATETATEPPTIDTRTASRHTSIAPSLLRPRHTCERKEHAHHFRVLIDAAE
YFETLRAAMIRARHSIYIVGWDIDSRLELVPGGAPDGLPAPLADFLCALAEANRHLRIYV
LAWDFAMLYAFEREWLPVYKLGWRTHRRIRFRQDGRHPLGASHHQKIVVIDDGLAFVGGI
DLTRSRWDTPEHHPHAPLRRNGGATPYQPMHDVQAMFDGPAAHAVSLLVRERWLRATTKA
IDATPDSTSLAYDAASIWPADIAADIEEVELGISLTQPAFEGRPLVEQIQQLYVDAIASA
KRTIYIENQYFTASRVGAALAARLADADSPDIAVVGPERTSGWLQEATMGVLRARLHGLL
KQADERGRYAMYAPTTGGQFINVHSKLMTVDDDVLIVGSANLNNRSMVLDTECNITLEAR
GDSRVQRVIASVRNRLLAEHLDVSPADVQSALGTQRLNAAIAQLRHGERTLMPLDPVVSG
DLEDLASRMSVLDAEAPVAPHELVRHFLPEERSRPLTGKLLALGTLALIVVALAVLWRFT
PLRDAVSFATLVHGAQRVHASPLGPFAIVALYAIAASVSVPVTLLIAASGFVFGALWGSA
YAFAGTMISACITYYAGAALGHDAVRKLAGSRINRISEKLGKKGFVTVVILRVVPVAPFT
IINLAAGASHISLRDYLAGTVLGMTPGIVLATTFAHQLVAAVRHPSMTGLALVALIGATL
VGLSVALQRFFARRS