Protein Info for QEN71_RS09895 in Paraburkholderia sabiae LMG 24235

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 527 PF00355: Rieske" amino acids 8 to 93 (86 residues), 60.9 bits, see alignment E=3.3e-20 PF13806: Rieske_2" amino acids 9 to 103 (95 residues), 29.7 bits, see alignment E=1.9e-10 PF07992: Pyr_redox_2" amino acids 123 to 430 (308 residues), 169.1 bits, see alignment E=5.2e-53 PF00070: Pyr_redox" amino acids 268 to 349 (82 residues), 50 bits, see alignment E=1.2e-16

Best Hits

KEGG orthology group: None (inferred from 85% identity to bph:Bphy_5415)

Predicted SEED Role

"Ferredoxin reductase" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (527 amino acids)

>QEN71_RS09895 FAD-dependent oxidoreductase (Paraburkholderia sabiae LMG 24235)
MTTNTTMQKAARLSDLADNGMKRIEADGTPILLIRRGHTVHAYSADCPHAGAPLEQGALC
DGRLICPWHKGTFDIATGALVEPPALLPLTRYPVRIEHDDVLVGSTPEPSETKPATAADQ
RTFAIVGAGAAGAAACAALREAGFAGRIALIDREPRTPYDRTVLSKFVPSGEMPVDDIPP
LLPDDFFAKHGVDRIQAEVTTLDAKARRIDIGSAPSIRYDAALVATGGIPKRLTLQGSEA
DSVKPRIRLLRNRDDARRLVETAQQGEHALVLGASFVGLEVASALRERKLRVTVVSPGNV
PFEKQFGPELGRLFMRLHEAHGVKVRMGRQARSVEPGDADGDGALRVTLDNGDTVSCDFI
VAGIGVTPATDFLDGVTRNEDKSLNVDSSMRVKDGPDGLYAAGDIARFELQAPVSERVRI
EHWRVAQQQARIAAHAMLGMPPKEPLVPFFWTYHFGKTFEYLGHAKHWDETRFTGTPDTF
EFIALLGDKGKLVAAVGCNREKQTGMLVEALRKPLTLDDATKIAESA