Protein Info for QEN71_RS09615 in Paraburkholderia sabiae LMG 24235

Annotation: YdeI/OmpD-associated family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 193 PF08818: DUF1801" amino acids 15 to 112 (98 residues), 76.6 bits, see alignment E=1.6e-25 PF13376: OmdA" amino acids 128 to 187 (60 residues), 69.7 bits, see alignment E=1.6e-23

Best Hits

Swiss-Prot: 63% identical to YDEI_BACSU: Uncharacterized protein YdeI (ydeI) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 85% identity to bph:Bphy_5464)

Predicted SEED Role

"DUF1801 domain-containing protein" in subsystem Experimental tye

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (193 amino acids)

>QEN71_RS09615 YdeI/OmpD-associated family protein (Paraburkholderia sabiae LMG 24235)
MNPKVDAYIGKLEKWREETEKLRAIALACPLTEDLKWGVPCYTVDNANVVIIHGFKDYCA
LLFVKGALMKDPKGILIQQTENVQSARQIRFTGLKDIVKLEATLKTYIRQAIEVEQAGLK
VERKTTAEFDVAEEFQNRLDAQPSLKKAFEALTPGRQRAYLLHFSSAKQSKTREARIDRC
TPLILEGKGLNDE