Protein Info for QEN71_RS09240 in Paraburkholderia sabiae LMG 24235

Annotation: DUF421 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 transmembrane" amino acids 17 to 36 (20 residues), see Phobius details amino acids 48 to 67 (20 residues), see Phobius details amino acids 73 to 92 (20 residues), see Phobius details PF20730: YetF_N" amino acids 18 to 66 (49 residues), 28.8 bits, see alignment E=9.2e-11 PF04239: DUF421" amino acids 93 to 163 (71 residues), 29.1 bits, see alignment E=6.4e-11

Best Hits

KEGG orthology group: None (inferred from 87% identity to bph:Bphy_5498)

Predicted SEED Role

"FIG028593: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (183 amino acids)

>QEN71_RS09240 DUF421 domain-containing protein (Paraburkholderia sabiae LMG 24235)
MDLITTVFGEGKDLTALQAVMRAIVVFVVTLVCIRISGRRSFGQRSPFDYVVAILLGATL
SRVIVGASPVVPTLAASLVIVLIHRALAWCCVRSPWLESLVVGVEREVYRDGRFDSRQMS
AALITRTDIVEAARREFHTRDLHDVHAAILERNGQMSLIRKRPRRDERASAESDADGYAR
KAR