Protein Info for QEN71_RS08955 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 signal peptide" amino acids 15 to 15 (1 residues), see Phobius details transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details amino acids 107 to 133 (27 residues), see Phobius details amino acids 145 to 165 (21 residues), see Phobius details amino acids 173 to 194 (22 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 260 to 283 (24 residues), see Phobius details amino acids 292 to 311 (20 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details amino acids 350 to 371 (22 residues), see Phobius details amino acids 381 to 399 (19 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 324 (300 residues), 81.9 bits, see alignment E=2.1e-27 amino acids 280 to 412 (133 residues), 39.1 bits, see alignment E=2.2e-14

Best Hits

KEGG orthology group: None (inferred from 94% identity to bph:Bphy_3109)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (414 amino acids)

>QEN71_RS08955 MFS transporter (Paraburkholderia sabiae LMG 24235)
MSTTRSAYAAPLKNPTLYVIVAAALILSAAMGIRQTFGLFIGPFSYDRGLPVTLVAFAIA
LHNLVWGFAQPFAGAAADRYGAAPVVAFGATTFAAGLALAASAPSGIALIAGLGLLVGIG
VSCTTFGVVLTAVGRVATPAQRSMAMGIASAGGSLGQVLLVPFAQVVRETSGVSTSLFAL
AFLMLVAAPFGILLDRRHDTSAPQAAASPVTASLRETLAYATQHRGYRLLTLGFFTCGFQ
LAFIATHLPGYLTLCHMPMGLGATALALIGLFNMAGSWACGWLGGRFRQQHVLGWLYLIR
GATIAAFFLLPKSTESVVLFAAVMGLTWLGTVPLTSGLIAKVFGTRHLGTLFGVVFLSHQ
LGSFLGAWLGGYVFDATGSYTPIWAATALAGLFAALLHFPIDDTVHASAEPARA