Protein Info for QEN71_RS08620 in Paraburkholderia sabiae LMG 24235

Annotation: ionic transporter y4hA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 35 to 54 (20 residues), see Phobius details amino acids 65 to 89 (25 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 134 to 154 (21 residues), see Phobius details amino acids 167 to 185 (19 residues), see Phobius details amino acids 214 to 236 (23 residues), see Phobius details amino acids 248 to 271 (24 residues), see Phobius details amino acids 283 to 307 (25 residues), see Phobius details amino acids 321 to 336 (16 residues), see Phobius details amino acids 342 to 361 (20 residues), see Phobius details PF01699: Na_Ca_ex" amino acids 35 to 187 (153 residues), 66.6 bits, see alignment E=1.2e-22 amino acids 220 to 360 (141 residues), 48.1 bits, see alignment E=6.2e-17

Best Hits

Swiss-Prot: 51% identical to Y4HA_SINFN: Putative ionic transporter y4hA (NGR_a03490) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: K07300, Ca2+:H+ antiporter (inferred from 96% identity to bph:Bphy_3245)

Predicted SEED Role

"Calcium/proton antiporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (362 amino acids)

>QEN71_RS08620 ionic transporter y4hA (Paraburkholderia sabiae LMG 24235)
MASTSPVLPRWTIAAPIIAWIVLGAAYALPGNGLLTALAAIALAGSVFAGVHHAEVVAHR
VGEPFGTLVLAVAVTVIEVALIVSVMLSAGPEKAGLARDTVFAAVMIVCNGIVGICLLVG
GLHHREQGFQIRGASAALAVLASLSVLTMVMPNYTSVALGPALSDSQLAFAGVSSLVLYG
VFVFVQTVRHRDYFLADARAGDESVHAEPPSARVALTSSALLVVSLVAVVLLAKVLSPVV
ERAVLEAGAPAAVVGIVIAALVLLPEGLAAVRAARADRLQTSLNLALGSALASIGLTIPT
VALVFIWTGRPLVLGIDGKDTVLLTLTLLISTLTLGTGRTTILQGAVHLSLFAAYLFLSF
AP