Protein Info for QEN71_RS08040 in Paraburkholderia sabiae LMG 24235

Annotation: sarcosine oxidase subunit beta family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 TIGR01373: sarcosine oxidase, beta subunit family" amino acids 3 to 406 (404 residues), 729.9 bits, see alignment E=3.7e-224 PF01946: Thi4" amino acids 32 to 72 (41 residues), 28.6 bits, see alignment 2.1e-10 PF01266: DAO" amino acids 34 to 379 (346 residues), 241.8 bits, see alignment E=4.2e-75 PF00890: FAD_binding_2" amino acids 34 to 238 (205 residues), 25.3 bits, see alignment E=2.3e-09 PF13450: NAD_binding_8" amino acids 37 to 78 (42 residues), 27.2 bits, see alignment 9.7e-10

Best Hits

Swiss-Prot: 66% identical to SOXB_CORS1: Sarcosine oxidase subunit beta (soxB) from Corynebacterium sp. (strain P-1)

KEGG orthology group: K00303, sarcosine oxidase, subunit beta [EC: 1.5.3.1] (inferred from 99% identity to bph:Bphy_3333)

MetaCyc: 66% identical to sarcosine oxidase beta subunit (Corynebacterium sp.)
RXN-22742 [EC: 1.5.3.24]

Predicted SEED Role

"Sarcosine oxidase beta subunit (EC 1.5.3.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (EC 1.5.3.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.5.3.1

Use Curated BLAST to search for 1.5.3.1 or 1.5.3.24

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (414 amino acids)

>QEN71_RS08040 sarcosine oxidase subunit beta family protein (Paraburkholderia sabiae LMG 24235)
MSRYSIFSLFRNGLSYHENWERQWRSPEPKKEYDVVIVGGGGHGLATAYYLAKEHGVKNV
AILEKGWIGGGNTARNTTIVRSNYLWDESAALYEKAMKLWEGLSQDLNYNVMFSQRGVMN
LAHTLQDVRDTERRVNANRLNGVDAEFLTPEQIKEIEPTINLNSRYPVLGASIQRRAGVA
RHDAVAWGFARGADQAGVDIIQNCQVTGIRRDGGRVTGVDTVKGFIKAKKVAVVAAGNTT
TLADMAGIRLPIESHPLQALVSEPIKPVVNSVIMSNAVHAYISQSDKGDLVIGAGVDQYT
GFGQRGSFHIIEGTLQAIVEMFPVFSRVRMNRQWGGIVDVSPDACPIISKTDVKGLYFNC
GWGTGGFKATPGSGWVFAHTIANDEPHPLNAAFSLDRFYSGHLIDEHGAAAVAH