Protein Info for QEN71_RS07680 in Paraburkholderia sabiae LMG 24235

Annotation: DMT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 9 to 26 (18 residues), see Phobius details amino acids 33 to 55 (23 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 126 to 148 (23 residues), see Phobius details amino acids 154 to 174 (21 residues), see Phobius details amino acids 185 to 202 (18 residues), see Phobius details amino acids 214 to 236 (23 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details amino acids 272 to 298 (27 residues), see Phobius details PF00892: EamA" amino acids 9 to 140 (132 residues), 48.2 bits, see alignment E=6.4e-17 amino acids 157 to 286 (130 residues), 43.6 bits, see alignment E=1.7e-15

Best Hits

KEGG orthology group: None (inferred from 93% identity to bph:Bphy_5090)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>QEN71_RS07680 DMT family transporter (Paraburkholderia sabiae LMG 24235)
MSLSRSQQGALTLASGGLLMGTIGVFVEEARLGALTLVFFRCLFGFLSLAAYCAWKGYFA
RRYFTRRTVMLAAISGVLMVTQWVGFFDAIHRTSIAVATVVFHVQPFWVVLIGAALFNER
LGVDRLGWIATAFVGLVLASGVAAAGSLQGHTSYLIGIGEALAGSVLYASVTLIAKSLGD
LRPHLLTLAQCAVGVVCLPFIAPLGAEHIAASQWFWLIGMGVLHTGLSYVLIYGALPKLT
TPVIAVLLFVYPLTAIAVDAIVYGRALSVAQMAGMVLIVVASLGVNLGWPLVSVFRVLAL
RR