Protein Info for QEN71_RS07345 in Paraburkholderia sabiae LMG 24235

Annotation: sugar ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 PF00005: ABC_tran" amino acids 35 to 186 (152 residues), 110 bits, see alignment E=1.5e-35 amino acids 285 to 445 (161 residues), 66.4 bits, see alignment E=4.3e-22

Best Hits

KEGG orthology group: K10441, ribose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 94% identity to bph:Bphy_1236)

Predicted SEED Role

"Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (536 amino acids)

>QEN71_RS07345 sugar ABC transporter ATP-binding protein (Paraburkholderia sabiae LMG 24235)
MALIDQEADQEAARQALPAVLSVTGIGKTYVEPVLADVSLALHAGEALALTGENGAGKST
LSKIIGGLVDPTTGTMQLEGKPYAPASRTEAEALGIRMVMQELNLLPTLSVAENLFLNRL
PRNGFGWIDRRKLREDAREAMAQVGLEAIDPDTLVGELGIGHQQMVEIARNLIGDCRVLI
LDEPTAMLTAREVDLLFEQIDALKSRGVALVYISHRLEELARVAERIAVLRDGKLVRVDL
MSNLTSDQIVTLMVGREIGERIDLGVRNIGTTLLKVEHMSRAPVVHDVSFEVKAGEIFGV
SGLIGAGRTELMRLIYGADQKDGGTVSLAATPGAAPSAVQIATPVDAVRHGIALITEDRK
GEGLLLPQPIAANVSLGNLRSVARHGVVDARRENALAKKQIDAMRIRTSGPAQPVGELSG
GNQQKVVIGRWLARDCKVLLFDEPTRGIDVGAKFDIYGLMGALAREGRALVVVSSDLREL
MLICDRIGVMSAGRMTGVFKRDEWTQDALLAAAFAGYRNREALLHTHDDHEGETLS