Protein Info for QEN71_RS06695 in Paraburkholderia sabiae LMG 24235

Annotation: lytic transglycosylase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 225 PF01464: SLT" amino acids 12 to 110 (99 residues), 44.3 bits, see alignment E=6.4e-16

Best Hits

KEGG orthology group: K03194, type IV secretion system protein VirB1 (inferred from 75% identity to bpy:Bphyt_6507)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (225 amino acids)

>QEN71_RS06695 lytic transglycosylase domain-containing protein (Paraburkholderia sabiae LMG 24235)
MLPLDFATLVQQCAPQVSPVTMAAIVRTESGFNPYAIGVVHGRLVRQPANQTEAEATARA
LATGGWNFSVGLAQVNRTNWAAYGLNEQRAFDPCRNLAAGAAILEGCFTAARAARTDGRR
DPQAALRAGLSCYASGNFSAGYRTGYVQRVVNNARLPASIPSHTVVPAIEAIPVVPTGPA
GLDERAMPATRTSSQPAMHRLPDPDPLDTASGTNADDPRGSAVVF