Protein Info for QEN71_RS06650 in Paraburkholderia sabiae LMG 24235

Annotation: HTH-type transcriptional regulator ArgP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 324 TIGR03298: transcriptional regulator, ArgP family" amino acids 3 to 291 (289 residues), 302 bits, see alignment E=1.9e-94 PF00126: HTH_1" amino acids 6 to 62 (57 residues), 65.8 bits, see alignment E=2.7e-22 PF03466: LysR_substrate" amino acids 116 to 287 (172 residues), 45.8 bits, see alignment E=4.8e-16

Best Hits

KEGG orthology group: K05596, LysR family transcriptional regulator, chromosome initiation inhibitor (inferred from 71% identity to bpy:Bphyt_6516)

Predicted SEED Role

"chromosome initiation inhibitor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (324 amino acids)

>QEN71_RS06650 HTH-type transcriptional regulator ArgP (Paraburkholderia sabiae LMG 24235)
MNFDRQQLETFAVVVETRHFGRAAHALNVTRGAVSQRMIALEEAVGTPLLVRDGMMLTPA
GEIMLLHVQALQLLEADTLQRIKPAEKGRTKIAIAVNADSLATWFEAVACAIAKENLALE
LIVDDQDYTLSVLTRGEAMGCVSTASSAPTGFVAEPIGEMEYECVATPEFAKTHFADGVT
LHNILAAPAVLFNRKDGLHSIFLERLIGFPVHGYATHFFPSPIALLSAIRAGVGYGLVPS
LQIQSLIDSGDVISIAPQRKIAVSLYWHHWKAAPPNARQISELIMHHAREVLTQLTAESP
HYSVKGGRWAAIGSVDGQNDSGNS