Protein Info for QEN71_RS06620 in Paraburkholderia sabiae LMG 24235

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 59 to 80 (22 residues), see Phobius details PF01266: DAO" amino acids 29 to 82 (54 residues), 29.7 bits, see alignment 1.2e-10 PF00890: FAD_binding_2" amino acids 29 to 88 (60 residues), 27.2 bits, see alignment E=5.9e-10 PF12831: FAD_oxidored" amino acids 29 to 447 (419 residues), 393.8 bits, see alignment E=3.1e-121

Best Hits

KEGG orthology group: None (inferred from 64% identity to spl:Spea_3248)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (456 amino acids)

>QEN71_RS06620 FAD-dependent oxidoreductase (Paraburkholderia sabiae LMG 24235)
MTSDRYFRGWETIHNSPAFTDVPLLAEVDVCVVGGGAAGVAAATIAAEAGRSVILVERYG
FCGGAAVAGMSGTICGMFLASDRTRTPEQVVFGFTERFRKRLSERGGLTAPQIYGKTWTV
THDPLVWSETADQFLNDAGVRLLYHTVVTGVLIEDGTYRGLLLESSAGRSTVRAKVIIDA
SGDASVVARAGGRYTFGDNGKIQNPTMFFRLGNVDCDRFLDAWGSDTICPPWVTERIRLA
NAEHRYTLPREKIWVFPTPRDHELLVNATRLQAKDGRMLNVIDPEDFTQAEVLGREQVRE
YARFFAENVAGCERSFVIDTGVEAGIRQTRSIVGVDTLRNQDVLECRKRPDGICRVPWPI
ELHAGERPKLHWLLDDYYEVPYNAMIPENGENIIVAGRCLSAEHEALASARVTAQCFEYG
QAAGLAASYALANNVTVRALQGETIRALMKAHGSAL