Protein Info for QEN71_RS05440 in Paraburkholderia sabiae LMG 24235

Annotation: DUF3443 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 signal peptide" amino acids 1 to 44 (44 residues), see Phobius details PF11925: DUF3443" amino acids 78 to 440 (363 residues), 467.8 bits, see alignment E=1.1e-144

Best Hits

KEGG orthology group: None (inferred from 81% identity to bph:Bphy_1525)

Predicted SEED Role

"Heavy-chain fibroin (Fragment)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>QEN71_RS05440 DUF3443 domain-containing protein (Paraburkholderia sabiae LMG 24235)
MNKSPTRAVRFAQNTFPTFVALAMLIALTGCGGGGGGASGTSGASPQTSATPPSASGTPT
ASAPVAVSTPVATVPQSTVPNVQPIVVTTTPTQTRNMLTTSVTICAPGTANCVTIDNVQV
DTGSQGLRVLASQLPASLALSAVSATTSAGATSRISAECSVFGTGFTWGAVRTADVRMAG
QLAAGVSIQVIGDATVPTVPADCAASGLPMMTPSTLRVNGILGIGLFSVDCGGACITSAL
PRWYYGCDVAGACASTTQPLDQQVANPVSRFALDNNGVVIDLPAVGPNGAAAVNGSMIFG
IGTQANNTLGSATVLKANSITGYVTTSLNGQPYSQSFIDSGSNGLFFPSTTLTRCGFWWC
PASTQSLTATLTGTDGGSASPAFSIANAQSLFATQNYAFDNLGGPSNAFDWGLPFFYGRR
VYTAIESRLTSAGRGPYYAF