Protein Info for QEN71_RS05435 in Paraburkholderia sabiae LMG 24235

Annotation: YadA-like family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 665 signal peptide" amino acids 16 to 20 (5 residues), see Phobius details amino acids 39 to 42 (4 residues), see Phobius details transmembrane" amino acids 21 to 38 (18 residues), see Phobius details PF05658: YadA_head" amino acids 67 to 89 (23 residues), 21.2 bits, see alignment (E = 4.4e-08) amino acids 95 to 117 (23 residues), 11.3 bits, see alignment (E = 5.6e-05) amino acids 149 to 177 (29 residues), 10.5 bits, see alignment (E = 0.0001) amino acids 182 to 203 (22 residues), 15 bits, see alignment (E = 3.9e-06) amino acids 371 to 397 (27 residues), 27.1 bits, see alignment (E = 6.3e-10) amino acids 389 to 409 (21 residues), 16.7 bits, see alignment (E = 1.1e-06) amino acids 467 to 493 (27 residues), 22.6 bits, see alignment (E = 1.6e-08) PF05662: YadA_stalk" amino acids 209 to 234 (26 residues), 42.4 bits, see alignment (E = 1.1e-14) amino acids 265 to 304 (40 residues), 27 bits, see alignment 7.3e-10 amino acids 415 to 443 (29 residues), 36.9 bits, see alignment (E = 5.9e-13) amino acids 553 to 593 (41 residues), 42.6 bits, see alignment 1e-14 PF03895: YadA_anchor" amino acids 604 to 662 (59 residues), 48.1 bits, see alignment 1.5e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (665 amino acids)

>QEN71_RS05435 YadA-like family protein (Paraburkholderia sabiae LMG 24235)
MSNLQSGMGVRRERAYSLEGCIGMAVAMSLGTIAWSPAALAASVTDYIAVSTNVMAGAPT
EVSNELNTMAIGPSANASGSNALAVGAGAAASRMGSTAVGTRTAALAINSTVIGYSASTG
FNADRAVSIGYMASADGADALGLGSMSLANGQSSVAIGVNAFAGSGAVDGLALGSGSSVV
ANGAVALGANAKADRANTVSVGNATLQRQIINVAAGTADTDAVNVSQLRGTVSSGLADAV
MYDSSAHARVTLGGATASAPVHLANVADGAVDAASLDAINGSQLHGLSASVASALGGGAS
VATDGSVVAPSYRVGGSVFRNVGDALGNLDGRVTSNTTAINDLNVALGNVINNGIEARFF
HANSTLADSLATGSDSVAIGGGAQAAFANSVALGANAVTDRANSVSVGSFGNERQVTHVA
AGTADTDAVNLGQLNDAISQIANVQISGVPTPFVSANGDATAEAASATGTHATAVGAAAL
ANGDQATALGGGAQSNAAAATAVGAQAVANSANASAFGTGSQALASGAVALGSGSVADRA
NTVSVGQAGSERQIVNVAPGTRGTDAVNLNQLNAAVDQTNQSIHDLDRSTRKGIASASAL
QIVTPYLPGRTTLNAGVAGYRGQAAFGLGVSRWNEKGTINLNAGVASAGSNSTIVRAGIG
IVLSD