Protein Info for QEN71_RS05375 in Paraburkholderia sabiae LMG 24235

Annotation: benzoyl-CoA 2,3-epoxidase subunit BoxA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 TIGR03224: benzoyl-CoA oxygenase/reductase, BoxA protein" amino acids 9 to 416 (408 residues), 761.5 bits, see alignment E=1.1e-233 PF00037: Fer4" amino acids 15 to 36 (22 residues), 28 bits, see alignment (E = 7e-10) amino acids 42 to 65 (24 residues), 24.8 bits, see alignment (E = 7e-09) PF12800: Fer4_4" amino acids 17 to 31 (15 residues), 15.4 bits, see alignment (E = 1e-05) amino acids 46 to 62 (17 residues), 13.9 bits, see alignment (E = 3e-05) PF12838: Fer4_7" amino acids 20 to 63 (44 residues), 28.1 bits, see alignment 1.1e-09 PF13187: Fer4_9" amino acids 20 to 64 (45 residues), 27.6 bits, see alignment 1.2e-09 PF00175: NAD_binding_1" amino acids 277 to 383 (107 residues), 51.3 bits, see alignment E=8.6e-17

Best Hits

KEGG orthology group: None (inferred from 90% identity to bph:Bphy_1538)

Predicted SEED Role

"Benzoyl-CoA oxygenase component A" in subsystem Benzoate transport and degradation cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>QEN71_RS05375 benzoyl-CoA 2,3-epoxidase subunit BoxA (Paraburkholderia sabiae LMG 24235)
MNAPVPVDILKQHLIDPEICIRCNTCEETCPIDAITHDGTNYVVMPDVCNGCMACVPPCP
TGAIDNWRTVLKADAWSIDEQYTWDVLPEQGTMAPPAASEASADTASASSDSTNEAQGIE
VDTVRGAVVPPWSAARPYVNLYTHKNPTTATVVGNYRLTDEATESDIHHIVLDFGSMPFP
VLEGQSIGILPPGSAADGRSHHARQYSIASPRDGERPGYNNVSLTVKRVTQDYHGNAASG
VSSNYLCDLKKGDVVSVIGPFGSTFLMPNHPNSHLLMICTGTGSAPMRAMTEYRRRRRLK
GATGKLMLFFGARTKEELPYFGPLTNLPKDFIDTNLAFSRTPGEPKRYVQDAMRERAADV
AQLLRDDSTYIYVCGLKGMEDGVLQSLKDIADRHGLEWDVLWQKLKREGRLHLETY