Protein Info for QEN71_RS04215 in Paraburkholderia sabiae LMG 24235

Annotation: ribosome maturation factor RimM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 231 TIGR02273: 16S rRNA processing protein RimM" amino acids 58 to 230 (173 residues), 136.1 bits, see alignment E=3.9e-44 PF01782: RimM" amino acids 59 to 144 (86 residues), 55.7 bits, see alignment E=4.8e-19 PF05239: PRC" amino acids 151 to 226 (76 residues), 46.5 bits, see alignment E=2.9e-16

Best Hits

Swiss-Prot: 93% identical to RIMM_PARP8: Ribosome maturation factor RimM (rimM) from Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815)

KEGG orthology group: K02860, 16S rRNA processing protein RimM (inferred from 93% identity to bph:Bphy_0770)

Predicted SEED Role

"16S rRNA processing protein RimM" in subsystem Ribosome biogenesis bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (231 amino acids)

>QEN71_RS04215 ribosome maturation factor RimM (Paraburkholderia sabiae LMG 24235)
MSERDSGSSGRAKAKTQPGAKASFGAFVRKPVEKVVANAAEAQEARAESAESWPDDAVEV
GAIVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLEKGRERKSAPRLQSKVHGDSIVAQ
LGGTADRDAAFALRGHRVYVRRSDFPALGTDEYYWVDLLGLDVFNEAGVELGKVADLIDN
GAQSVLRIEYPATGKDGKPVTGERLIPFVGVYVKTVDQAAKKIIVDWEADY