Protein Info for QEN71_RS04205 in Paraburkholderia sabiae LMG 24235

Annotation: TM2 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 41 to 60 (20 residues), see Phobius details amino acids 68 to 92 (25 residues), see Phobius details amino acids 112 to 137 (26 residues), see Phobius details PF05154: TM2" amino acids 12 to 58 (47 residues), 34.7 bits, see alignment E=8.1e-13

Best Hits

KEGG orthology group: None (inferred from 91% identity to bph:Bphy_0768)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (155 amino acids)

>QEN71_RS04205 TM2 domain-containing protein (Paraburkholderia sabiae LMG 24235)
MATVATHNSRFRSKTLTAALAFFFGTLGAHRFYLYGLRDVWGWAHLVGTIIGIPGFMLLA
ATERTAIMGWVLAFPGAVSMLAAFLAAIVYGLRPDEKWDAQFNAHTEQQSRSGWTVIFVV
IFSLLIGAFLLMTGLALSFQTYFESQVEAAKAISQ