Protein Info for QEN71_RS03085 in Paraburkholderia sabiae LMG 24235

Annotation: DNA repair protein RadC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 PF20582: UPF0758_N" amino acids 23 to 97 (75 residues), 72.2 bits, see alignment E=3.1e-24 TIGR00608: DNA repair protein RadC" amino acids 29 to 241 (213 residues), 228.4 bits, see alignment E=4.4e-72 PF04002: RadC" amino acids 121 to 240 (120 residues), 139 bits, see alignment E=7.5e-45

Best Hits

Swiss-Prot: 70% identical to Y781_BURTA: UPF0758 protein BTH_I0781 (BTH_I0781) from Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CIP 106301 / E264)

KEGG orthology group: K03630, DNA repair protein RadC (inferred from 96% identity to bph:Bphy_0585)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (242 amino acids)

>QEN71_RS03085 DNA repair protein RadC (Paraburkholderia sabiae LMG 24235)
MNDTIVIPLTNAEKSPIRRAPPAWPARDMPRERLLDAGPGALSDTELVALVLGSGLPGHN
VFDVARSLLQRFGSLRAMLDGTPEDFDGMRGVGPAKRAQLLAIMEMARRALAEKMRERPL
IDSPEAVEDYLRLLIGSRPYEVFICLFLDTRHRLIRSEENSRGSLTRMAVYPREIVRRAL
SVNAASLIVAHNHPSGAVKPSASDRQLTRVLRDTLALIDVQLIDHLVIGANETFSFARAG
WP