Protein Info for QEN71_RS02615 in Paraburkholderia sabiae LMG 24235

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 PF13432: TPR_16" amino acids 20 to 81 (62 residues), 37.6 bits, see alignment E=2.1e-12 amino acids 52 to 116 (65 residues), 43.9 bits, see alignment E=2.4e-14 amino acids 121 to 183 (63 residues), 30.2 bits, see alignment E=4.5e-10 amino acids 190 to 251 (62 residues), 22.9 bits, see alignment E=8.8e-08 PF14559: TPR_19" amino acids 26 to 83 (58 residues), 27.8 bits, see alignment 2.2e-09 amino acids 196 to 254 (59 residues), 30.2 bits, see alignment 3.8e-10 PF13424: TPR_12" amino acids 48 to 112 (65 residues), 32.3 bits, see alignment E=8e-11 PF13181: TPR_8" amino acids 49 to 81 (33 residues), 17.9 bits, see alignment (E = 2.3e-06) amino acids 118 to 146 (29 residues), 12.7 bits, see alignment (E = 0.00011) amino acids 186 to 217 (32 residues), 11.9 bits, see alignment (E = 0.0002) amino acids 254 to 284 (31 residues), 13.6 bits, see alignment (E = 5.3e-05) PF13176: TPR_7" amino acids 52 to 81 (30 residues), 14.4 bits, see alignment (E = 2.9e-05) PF13431: TPR_17" amino acids 104 to 136 (33 residues), 22.2 bits, see alignment (E = 1e-07) PF00515: TPR_1" amino acids 116 to 148 (33 residues), 29.6 bits, see alignment (E = 3.8e-10) PF13428: TPR_14" amino acids 152 to 191 (40 residues), 24.8 bits, see alignment 2.2e-08 PF13174: TPR_6" amino acids 186 to 216 (31 residues), 13.1 bits, see alignment (E = 0.00011) PF13374: TPR_10" amino acids 256 to 281 (26 residues), 16.7 bits, see alignment (E = 5.2e-06) PF01075: Glyco_transf_9" amino acids 512 to 543 (32 residues), 23 bits, see alignment (E = 4e-08)

Best Hits

KEGG orthology group: None (inferred from 84% identity to bph:Bphy_0495)

Predicted SEED Role

"FOG: TPR repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (593 amino acids)

>QEN71_RS02615 tetratricopeptide repeat protein (Paraburkholderia sabiae LMG 24235)
MHNASPLTHEHAVPASVAERALAFHRAGELDRAEHAYRALLDTQPDDANTRYMLGVLYLQ
RQDVERAIESFDASLALQPDHADCLNDRGIAALSRGDNEDAANFFRRAVECAPHDALAHC
NLGKALRLLSKPEDALASFQKALALDGHFFEAALGSADALEILGRPHEAVAAYERAARHA
PDDMRVLLGLGLTLNAARRHTEAVTYFERALQQEPENAQALFGIAFAVDAQMNFDDAVIR
YKRALEVLPNSATLHNNIAFTLTCMSRYDEADEHLRRAIELAPDVSNAYKLLGMSELRRG
NFRKGWTYYEHRKTTASGQREYPPLDLPEWKGEPLDGKRFLLAREQGAGDQLQFVRYAGV
LHDLGATVDVWTSGELAPLFARMRGVNRVLTEAPTGGYDYYSRMMSVPTSLADDAIPHAV
PYLSVDESQVDAWRGLIGKAAGSSRKVGLVWAGNPHHYLDVYRSAPLAALEPLASVHGIA
WFALQKGAGEAQLDGVAHRWPICALGQLLDSFHATAAVIESLDLVITVDTSVAHLAGALG
KPVWVLLPKQADWRWTMSGDTTPWYPTARLFRQQVLGDWTPVVESVRRALEAL