Protein Info for QEN71_RS01920 in Paraburkholderia sabiae LMG 24235

Annotation: transporter substrate-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1485 signal peptide" amino acids 1 to 47 (47 residues), see Phobius details transmembrane" amino acids 540 to 562 (23 residues), see Phobius details PF00497: SBP_bac_3" amino acids 59 to 277 (219 residues), 91.6 bits, see alignment E=1.9e-29 amino acids 307 to 524 (218 residues), 83.2 bits, see alignment E=7e-27 PF00989: PAS" amino acids 584 to 694 (111 residues), 38.9 bits, see alignment 2.7e-13 TIGR00229: PAS domain S-box protein" amino acids 584 to 701 (118 residues), 52.5 bits, see alignment E=2.7e-18 PF08448: PAS_4" amino acids 590 to 698 (109 residues), 42.3 bits, see alignment 2.8e-14 PF00512: HisKA" amino acids 847 to 912 (66 residues), 71.1 bits, see alignment (E = 2.2e-23) PF02518: HATPase_c" amino acids 959 to 1072 (114 residues), 111.4 bits, see alignment 1.1e-35 PF00072: Response_reg" amino acids 1225 to 1338 (114 residues), 77.4 bits, see alignment 3.3e-25

Best Hits

KEGG orthology group: None (inferred from 86% identity to bph:Bphy_0358)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1485 amino acids)

>QEN71_RS01920 transporter substrate-binding domain-containing protein (Paraburkholderia sabiae LMG 24235)
MYCSLVPSQIPSHSTHRTLRTRVRHALTATFALLCTLLLGIQPAQAAPGAHPSGFPARLT
VGVLASGWPPFEMFQDGNYAGMSVDYLRAIVGPDVEITTKTFPDMDRLLAAACANRVDIV
TSIARTPEREHCLSFSTPYFRGSTSAVTLASRATALSGQQQVQAARVAVERGFALGAVLR
ERFPHAQFDSFDDTRSALQAIRQGQDNVYFGFTPAVRHYLADPEFSGLAIAFEETGQVSE
MRFAVPVARSDLRDKLDRGLTALQHEDEAAIRARWLGGSFEARPASAASNLVLSRDEQAW
LRTLPPLTVGFDGDWAPFSALDELGRPSGIAADYLDYLSRSLGITLRRVPAKDWPGTLAG
FQRGDIALLATANRNDPRLDRATFTHAYETYPLVIVAREAEPAARSLSDFAARRILVSVH
SKGAVPFQSYGVAAAHVSVAPRVDAALKFLAAGGADALVGNVAEIDAALAGQYAGVLKIV
GTVREPDPVGFAVRADLAPLAGLIDRALLAMPAPEHQRIRQKWVTGDARPRGGWSVTALR
LLPVLIGIGVILLVTLRAYVLLQREVGRRERTERELESQLNFQQTMMEMVPYPLVAKDLQ
GRYIAVNRAYEEATGLRHEMVIGRTSADVHAWGEDNSLRLEQLTRDALQNGSATQIELQF
ESRDGDSRHGLFCVCVCEDAGGAPLCVLGTLVDITDIRRAEMLANETQRRLIDVTGSLPA
VVFQLRRGLDGEYTFPYVGGDTEHLLGYDSAVLMRSAALDFGTICTEDRPGVVAALERSA
ASSEPLHLEFRIDGPSEQRWVRAELVPRREASGATVWSGYWVDASVERLRADELAHARDL
AEAASRAKDDFLAMMSHEIRTPMNGVLGLVEVLERTRLDADQGEMLGMIHESAGALLQIL
DDLLDYSKIEAGRLTIESEPIDLRDLVDTAVGLLAGRAHEKGLKVRVDVDPQVAATLRGD
SVRLRQILFNLLGNAIKFTPQGEVDIDVQVVEQSAHGQTVEITVDDTGIGIAPDVQARLF
EPFVQAESSTTRRFGGTGLGLTICRKLVALMGGTLSLSSTPGEGTRMTLRLLMPLDMQHY
RAGGLRGKRGIVFTSDAPVATALVHFGAALGLELRCARGAGFPDATTPQDVDLVFVGDGV
ELPVEIAQSNAKIISLTEKPKPTGYRIVDNAVRVSINPISWRGLSAACAAALTGLSPTPA
RQPGAAEAVTAPPDRERAITCGRLVLVAEDHPVNQELIRHQLALLGFACDVVNDGAEALE
ALDATPYGFLITDCHMPRMSGYELARAVRDKERETGARLPILGITANTAPEDLNACREAG
MDDCLVKPTRLATLREYLSRWFGAEGTRSVGQSEAPAVVAQDTRPQDAASIAYVPVDLSQ
LTQIWGSESTVKSLLDAFVSAVRDDLRALPPLLNEPDVGALRQWHHRVAGAVGVLQYPPL
LGVLERYRHQLTSAPSELLRSEGIALVRLCNTMLDGIEEQAALLA