Protein Info for QEN71_RS01360 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 PF00005: ABC_tran" amino acids 19 to 161 (143 residues), 136.3 bits, see alignment E=1.7e-43 TIGR01187: polyamine ABC transporter, ATP-binding protein" amino acids 35 to 350 (316 residues), 362 bits, see alignment E=1.3e-112 PF08402: TOBE_2" amino acids 276 to 351 (76 residues), 48.1 bits, see alignment E=1.6e-16

Best Hits

Swiss-Prot: 47% identical to POTA_NITEC: Spermidine/putrescine import ATP-binding protein PotA (potA) from Nitrosomonas eutropha (strain DSM 101675 / C91)

KEGG orthology group: K02052, putative spermidine/putrescine transport system ATP-binding protein (inferred from 98% identity to bph:Bphy_0224)

Predicted SEED Role

"ABC-type spermidine/putrescine transport systems, ATPase components"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (357 amino acids)

>QEN71_RS01360 ABC transporter ATP-binding protein (Paraburkholderia sabiae LMG 24235)
MAFLEIDSLHKTFGANTALHQFDMKIERGEFITFLGPSGCGKTTVLRMIAGFETPTRGTI
RLDGRDVTHLRTRQRKVGMVFQAYALFPNMTVAENIGFGLKIANRPQSEIKQRVDEMLQL
IKLPHLGERYPWQLSGGQQQRVALARALAGKPQVLLLDEPLSALDAKIRISLRQDIRALQ
RELGITSIFVTHDQEEALSISDRIVVMNEGRVEQVGTPLEIYNYPRTRFVASFVGTLNIL
SGHVIDPSTGRMAVDGQELRTTQSLPADDAGKKRMLALRPEAIVLEAPAAGRNTLTATVE
EVSFLGAIVRIRTRVKDEVISLDIFNDPNRRLPERGQPVALGFSHENLLVLEEGAQG