Protein Info for QEN71_RS00995 in Paraburkholderia sabiae LMG 24235

Annotation: bile acid:sodium symporter family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 transmembrane" amino acids 9 to 28 (20 residues), see Phobius details amino acids 34 to 54 (21 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 98 to 120 (23 residues), see Phobius details amino acids 129 to 153 (25 residues), see Phobius details amino acids 166 to 185 (20 residues), see Phobius details amino acids 197 to 215 (19 residues), see Phobius details amino acids 227 to 253 (27 residues), see Phobius details amino acids 282 to 303 (22 residues), see Phobius details PF13593: SBF_like" amino acids 9 to 317 (309 residues), 361.2 bits, see alignment E=5.2e-112 PF01758: SBF" amino acids 43 to 215 (173 residues), 40.7 bits, see alignment E=2.1e-14

Best Hits

Swiss-Prot: 66% identical to Y2026_PSEAE: Uncharacterized protein PA2026 (PA2026) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K14347, solute carrier family 10 (sodium/bile acid cotransporter), member 7 (inferred from 96% identity to bph:Bphy_0152)

Predicted SEED Role

"Sodium/bile acid symporter family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>QEN71_RS00995 bile acid:sodium symporter family protein (Paraburkholderia sabiae LMG 24235)
MARPKLLPDNFTLCLIGTVIFASLLPVHGQAAQAFNWVTDVAVGLLFFLHGAKLSREAII
AGATHWRLHLVVLLSTFALFPILGLVLKPLLSPLVTPALYAGILFLCTLPSTVQSSIAFT
SIAKGNVPAAVCSASASSLLGIFITPALVSVVVTNQAASGGSAWHTVWNIVLQLLVPFVA
GQLLRPMIGGWIERNRGVLKFVDQGSILLVVYGAFSEAVNEGLWHQIPLAALGGLLVVCA
VLLALALTVTIFVSKRLGFSRADQITIIFCGSKKSLAAGVPMAKVIFATHAVGAVVLPLM
LFHQIQLMVCAALAQRWGARDVSAEKRAAQKSATAAVARR