Protein Info for QEN71_RS00960 in Paraburkholderia sabiae LMG 24235

Annotation: ion channel

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 52 to 77 (26 residues), see Phobius details amino acids 89 to 107 (19 residues), see Phobius details amino acids 118 to 140 (23 residues), see Phobius details PF01007: IRK" amino acids 47 to 145 (99 residues), 23.4 bits, see alignment E=9.5e-09 PF07885: Ion_trans_2" amino acids 74 to 142 (69 residues), 44.6 bits, see alignment E=2.1e-15 PF17655: IRK_C" amino acids 149 to 302 (154 residues), 98.3 bits, see alignment E=8.3e-32

Best Hits

Swiss-Prot: 42% identical to IRK10_MAGMG: Inward rectifier potassium channel Kirbac3.1 from Magnetospirillum magnetotacticum

KEGG orthology group: K08715, inward rectifier potassium channel (inferred from 95% identity to bph:Bphy_0145)

Predicted SEED Role

"Kef-type K+ transport systems, predicted NAD-binding component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>QEN71_RS00960 ion channel (Paraburkholderia sabiae LMG 24235)
MSATPPESSGDHPARAGRRLDRKIRARSHTVIAHGLPLRVWQDLYHRALTISWPVFFSSL
AFVFLVLNSIFASLYEFGGSAIANQNPKGFAGAFFFSVETLATVGYGDMHPQTLYGHLVA
TLEIFVGMSGIALATGLIFARFSRPRAKIMFSRFAIVRPIDGQTTLMVRTANARQNVIVE
ARARLRLMRVERSTEGYVLRKIYDLKLVRDQQPMFYLGWNLMHVIDEASPLFGETPESLD
SQDASLLLTIEGSDENTSQTMQARFSWPADDIRWQHRFVDLIREVNGVSHIDYSHFDDVE
PLQPHELQQAPTG