Protein Info for QEN71_RS00410 in Paraburkholderia sabiae LMG 24235

Annotation: efflux transporter outer membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 496 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 11 to 466 (456 residues), 426.3 bits, see alignment E=7.7e-132 PF02321: OEP" amino acids 67 to 257 (191 residues), 77.5 bits, see alignment E=6.2e-26 amino acids 283 to 464 (182 residues), 71.3 bits, see alignment E=4.9e-24

Best Hits

KEGG orthology group: None (inferred from 80% identity to bpy:Bphyt_0358)

Predicted SEED Role

"Heavy metal RND efflux outer membrane protein, CzcC family" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (496 amino acids)

>QEN71_RS00410 efflux transporter outer membrane subunit (Paraburkholderia sabiae LMG 24235)
MRLRSVVLALAGASLLAACTLGPDYKRPTAPTAATYKELEGTGWKAAEPADAHIRSAWWE
AYNDASLNALEQQVASENQNVQAAQARFRAARSQVAQFRSQFFPVVTMNGGYSRARSSEN
VKFKSSAGKTLDDWIVGADATWEPDLWGRVSRSVEGARANAQASAADAQSALLSMQAELA
TDYFELRGIDRERQLLDDTIAAYKEAVELTQNRYKGGIATDADVAQAQTQLRTTQAQSID
LGVQRAQLEHAIAILIGQPPSTFSLPVAPLVAVPVIAPVGVPSTLLERRPDIASAERHIV
DLNAQIGVTTAAYFPNLILSVTGGLEATNFSQWLLAPSRFWSLGPSLAGTLLDFGGRAAQ
KAEAQANYDEGVAQYRQTVLTAFGQVEDNIAALRVLEQEAQTQDDAVEAAQRSLAIMSNR
YKNGAITYLDVVVAQTTALTNEREAVSIARRRMAASVALIKALGGGWDATSLPTDEQLTH
PDAAGQPASAASATRS