Protein Info for QEN71_RS00150 in Paraburkholderia sabiae LMG 24235

Annotation: DNA-processing protein DprA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 TIGR00732: DNA protecting protein DprA" amino acids 84 to 295 (212 residues), 250.2 bits, see alignment E=6.7e-79 PF02481: DNA_processg_A" amino acids 86 to 286 (201 residues), 251 bits, see alignment E=7e-79 PF17782: DprA_WH" amino acids 324 to 382 (59 residues), 47.4 bits, see alignment E=1.6e-16

Best Hits

KEGG orthology group: K04096, DNA processing protein (inferred from 87% identity to bph:Bphy_0034)

Predicted SEED Role

"Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake" in subsystem Conserved gene cluster associated with Met-tRNA formyltransferase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (391 amino acids)

>QEN71_RS00150 DNA-processing protein DprA (Paraburkholderia sabiae LMG 24235)
MQPLPLTDSELTAWLRLAAAPGLNPAALRRLLSVFGLPEAVLLQTFAALAEATDEAIARA
ALAPPSADFPAQLDAVRAWRALPGNALVTLDDPVYPPSLLTMPDPPPLLYVKGRIELLHA
RSVAVVGSRSATPQGLEDASRFARAFSDAGVTVVSGLAAGVDGAAHRGALQARGSTVAVI
GTGADVVYPASHHALAHQIADHGAILSEWPLGTPARSANFPQRNRLIAGIVRGVLIVEAA
MRSGSLITARLANEMGRDVFAIPGSIHAPLARGCHRMIKQGAKLVETPEDVLEELGFAAP
PPEPAPAPKLRVVPQPLRTDTGSRAEAPPGSTADARRLLDALGHSPATLEILAERTDMDD
TLLQSTLLRLELAGELCALPGGRYVRAVRSA