Protein Info for Psyr_4900 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: AsmA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 741 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF05170: AsmA" amino acids 1 to 623 (623 residues), 421.5 bits, see alignment E=7.6e-130 PF13502: AsmA_2" amino acids 471 to 651 (181 residues), 80.9 bits, see alignment E=1.1e-26

Best Hits

KEGG orthology group: K07289, AsmA protein (inferred from 96% identity to psb:Psyr_4900)

Predicted SEED Role

"A/G-specific adenine glycosylase (EC 3.2.2.-)" in subsystem DNA repair, bacterial (EC 3.2.2.-)

Isozymes

Compare fitness of predicted isozymes for: 3.2.2.-

Use Curated BLAST to search for 3.2.2.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLP5 at UniProt or InterPro

Protein Sequence (741 amino acids)

>Psyr_4900 AsmA (Pseudomonas syringae pv. syringae B728a ΔmexB)
MKAFGKILGLFILGLLLIIVALGFALTHLFDPNDYKDEIRQLARDKANVELTLNGDIGWS
LFPWLGLELHDAHVATLTAPDQPFADVQMLGLSVRVLPLLRRQVQMSDIRVEGLNLTLHR
DENGHGNWEDIGKPAVASTETPGETTPAAAPDAPKADRPAQPIRLDIDSLTVNNARVDYS
DARKGRTFMAESIQLSTGPIREASDIPIKLTAFLSTNQPVVRAKTELVGELRMDRVLKRY
QFEDMRLSGEVAGEPLQGKTVTFSAQGQLLVDLAANIAEWNSLKVSANQLRALGELRARD
LDKTPQISGGLSIAQLDLRAFFENIGQPLPAMSEGALSKVEMVTRLAGTPTSLALENLNL
KVDDSSFTGRIAVDDFAKQALRVQLKGDTFDADRYRPAESEESKGAKAARKSEVQSGEAA
AAAGDSPLPEQPTKAAWSTAKLLPLERLRTLDVEADLSFGKLTLNKLPIDNAAFKTQANG
GVIKVDTLSGDLYNGNFEVKGNLDARPDTPVATVQTRIAKVPVERVLESQGQTPPVRGLL
TLDSNLTGTGNSEKALIDSLNGTASFALNNGVLVNANLEQQLCKGISILNRKTLSGEPRA
KDTPFQQLNGNLVIRNGVASNPDLKVRTPGMAVNGNGDVDLRVLGMNYRVGIIVEGDKSD
MPDPACEVNPRFVGIEWPVQCRGPLELGAKACRLDKEGVGQIAAKLAGDRISEKLEDKLN
DKLGDKVSPELKDALKGLFKR