Protein Info for Psyr_4665 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: membrane protein, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 transmembrane" amino acids 33 to 52 (20 residues), see Phobius details amino acids 59 to 76 (18 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 109 to 127 (19 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details PF04632: FUSC" amino acids 31 to 316 (286 residues), 61.6 bits, see alignment E=6.3e-21 PF13515: FUSC_2" amino acids 46 to 172 (127 residues), 53.3 bits, see alignment E=3.1e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4665)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZMD0 at UniProt or InterPro

Protein Sequence (358 amino acids)

>Psyr_4665 membrane protein, putative (Pseudomonas syringae pv. syringae B728a ΔmexB)
MTNSRSAFIPSWLRPVLRPLLDPYRRYRHARLIHAARIAVGLLVTILLTTGLNLPHGEWA
SVTMLIVIGGLQHHGNIGKKSVERAYGTLIGAGLGLIVVVQQGYLEMPLLTYAMMSVMCG
FFAYHAIGKGGYTALLSAITLFIVAGHGYNPISDGLWRTVDILIGIALALAFSFALPLYA
VFSWRYNLASGLRDCAKVYGRIVQGQPVTADEHLKLTARLNGTMLQLRSLLPSVSKEVKM
SMVELDAIQGHFRMCLSTLEILANIRPANLNQLADETLKASLDADYRQIRRQLIGMARAL
QTGATERLARTTETPETPAVKAVIPTELKGYHLMTQQLALNLDGLQARLAKTAKRWKF