Protein Info for Psyr_4229 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: ABC transporter:ABC transporter, N-terminal

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 transmembrane" amino acids 38 to 61 (24 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 157 to 179 (23 residues), see Phobius details amino acids 192 to 212 (21 residues), see Phobius details amino acids 278 to 301 (24 residues), see Phobius details PF06472: ABC_membrane_2" amino acids 34 to 302 (269 residues), 191.5 bits, see alignment E=3e-60 PF05992: SbmA_BacA" amino acids 43 to 351 (309 residues), 126.6 bits, see alignment E=2.2e-40 PF00005: ABC_tran" amino acids 387 to 521 (135 residues), 64.5 bits, see alignment E=2.5e-21

Best Hits

KEGG orthology group: K02471, putative ATP-binding cassette transporter (inferred from 100% identity to psb:Psyr_4229)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZNL3 at UniProt or InterPro

Protein Sequence (572 amino acids)

>Psyr_4229 ABC transporter:ABC transporter, N-terminal (Pseudomonas syringae pv. syringae B728a ΔmexB)
MNRNAEYSAVNDTVQGAFLPRVWKLITPYWRSEEKTTAWLLLVSVIALSLFSVQVSVFFN
SWYRDFYNALQNKDLAAFTHLILYFSGIAAIAILAAVYRLYLTQLLTIRWRRWLTEQHFA
RWLADKNYYQLEQGGYTDNPDQRLSEDLNEFTTSTLSLGLGLMSSVVSLVSFSVILWGVS
GSIELFGVTIPGYMFWAALLYALVGSLLTHWIGKRLIPLNNQQERFEADLRFALVRVREN
AESIALSEGERNENQRLSARFTMIWNNFRASMKVQKRLTFFTSGYSQIALIFPFIVAAPR
YFAGKIELGDLMQINSAFGNVQENFSWFISAYGTLASWRATSDRLLSFRQAMTDNEGRQP
AIERIHGNDTLDLRNLGLSIAGGRQLLSDASLQVGAGERVMLSGRSGSGKSSLLRALGGL
WPEGSGQIRLPTGTALFLPQRPYLPIGTLREAMSYPQPVEHYPAQRFAEVLNQCRLEHLI
PRLDESNHWQRFLSPGEQQRVAFARALLVAPNWLYVDEATSAMDEDDETAMHCAIIDGLP
GLTLISVGHRSSLKRFHDRHVRVESGKLIEQA