Protein Info for Psyr_4113 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: LppC putative lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 604 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF04348: LppC" amino acids 33 to 594 (562 residues), 661.3 bits, see alignment E=6.5e-203

Best Hits

KEGG orthology group: K07121, (no description) (inferred from 100% identity to psb:Psyr_4113)

Predicted SEED Role

"LppC putative lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZNX9 at UniProt or InterPro

Protein Sequence (604 amino acids)

>Psyr_4113 LppC putative lipoprotein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MIACLRLLSALCLAALLAACASSPSSSLGELPRTPDASIEQLLEQAASAKTPEQAATLRL
SAADLASRQNDAGRAAQILGQVQIDQLKPGLQVFASTLSAELAMGRNQPKAALTALNHPS
MQRLGELSVEQQIRTHMVKARALEADGQALAAANERVYAGPLLQGTDASANNDAIWTLVS
ALPAEQLQSTATDDMGGWLNLARSIKGAGTLEQQQAAIDNWKAQNPKHPAALQLPTALAQ
LRALTSEPITKIALLLPQDGQLAAVAKALREGFMAAHFQAQQAGENPPAIQVFDSSRITS
MDEFYRQAQAAGVQLVVGPLEKNLVKQLNSRQQLPITTLALNYSDTSNEGPAQLYQFGLA
AEDEAREVARRAWADGKRSAVAMVPKGEWGDRVLDAFRKSWQAKGGTLIAAEHVDQPVEL
AQQVADLFQLRNSEGRAQRLQSTAGTQIAAQPSRRQDIDFMFLAATPQQAQQIKPTMVFQ
YAGDVPVYATSHLFTNSNDHAQYMDLNGVRFCETPWLLNAEDPLRQQVTAQWPQAAGSLG
RLYAMGIDAYRLAPRLAQLKAMPDSRIDGLSGSLSLNPGRRVERQLPWAEFVDGKVQRLP
DTAP