Protein Info for Psyr_3829 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Leucine-rich repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1631 transmembrane" amino acids 432 to 450 (19 residues), see Phobius details PF20178: ToxA_N" amino acids 79 to 345 (267 residues), 183.1 bits, see alignment E=1.2e-57 PF14496: NEL" amino acids 1349 to 1567 (219 residues), 241.6 bits, see alignment E=9.9e-76

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3829)

Predicted SEED Role

"Leucine-rich repeat domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZPR3 at UniProt or InterPro

Protein Sequence (1631 amino acids)

>Psyr_3829 Leucine-rich repeat protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MFTLRYNPFETIESSVAHASVTPRAQDSAPFEAEHANSEFIRLNLPDWYVGAPTVLRQTL
HASQQSARRYAQALEPVRARLLSAQQFAAPLLSKAFVERFQLDLDVEAFQLMTWRYDSTW
NPAPLEQTLLQAALQNFAPSNRSRFDPYSAILRTGGLRYWLIDSAERRYKVEYRDRQAID
LEQFADFCHELDLGRQYQTHLDSVFKPPGPAAQAVASAFMDSERAAVEVLAHIAMMKGDI
TDAAYQTLLDMVKSVDQPRWDGKGVRYCQLHMLDTYTFSGSLLQGALLIQQDGAKPDDGP
CLVYLPAEPAHPVKQFASLRAFNAWLVTALDSKHYRRYFSRFVSLGQAPAFFAKLDARLY
PAGDRTLDPYADLVVQAQPFSKPPFERLYEQLLAKTYDDSKVIAVPSAQVDQQAHDALIE
SLENNGMNLLNVAGFFVPVLGEIMSVVALYQLASEAFVAYEDWKHDEVEDAMQHVYDIGE
NVAQMLVAGGVVAAVNGLQPSMFIESLVQRRVDGAVRLGKPSIDAYAHTVSLPDNLSSNA
LGLYEHDGKTWLPLDGKLYCVESDADGSQWRVRHPVNERSYAPRLKHNGAGAWRHEWENP
MGWDEVTAFRRLNPTCHALPEEDIHKVLHITGANEALLRQIHVENLRPPALLKDAIQRVA
TERQLHVCIEALKADDVPQVHVAHLGPWLKLLVSSPRWHETRGLLLLDAQGALLEAWNAG
SQMTLSSHVAGPTGHLSQVLGQLLESLPADEVTRLTGSDSADKVVQLRGFKRYLAGYAQT
HVGRLLDDVQLLEGRSDDPHVQLIQRDFGSLPSSVALELIGMASDADKARMTTEKRIPLA
LAEHAREYQQQLRINRATEGFYRAVTDNLDTQAAALGMLQYLPGWRGEVSIDLLKDSLEG
DEIASLDSDQASMHRLLVSTEAGIQCFEPSGEPLGEVDQQFFRALLQALPEQVRLDIQLP
AGADEPQLRSLLRNTAVQRRERMAAVLQLQPIKPGIKWPQRLPHGRIGYPLSGRLRGLFR
RLGIGASSHSPELAVKSLYPDFSDAQVASFLDELRAEHTGSARQLPRFVKRRLRGLADEL
RTLQNTLDAWIAQATSSLQRRSREVAARRLHGCWRRLSVHSISLQGEFLGYTLDLDNLRV
EQIPDITASFGHVAELKARNMQLTPAHVDALLNNFPNLRSLGLGFNELQSLPESIGRMTL
LTELSLNHNPLNWTAACNAILLNLRRLEVLDLNYCSLGSQARLTALNSLRMLFLRSTGIE
TLPVWNWRRSDLIRLDVRDNRISEISIEELDNIERSLSSTRLHLHLSGNPLTPPTLASIR
LFLEGRTRPRLGVSQNRSPLEAGPGSAAWLAGLSSEQAAVRTRLWQDLRACAGSTDFFQM
LGDLTYSADFSSHHEALAARVWAMIDAASASTELRLQLFDIAAHPQTCGDGLALIFGDME
VRVRVFSIMSSTPHAAQPLELFKMSRSLDRLDQVEKIALREIALRQQHGYRVDEAEVRLA
YRIGLQARLELPGQPQTMLFSNIAKVTDADLQDAHSEIITRESTRAFFESLVAREFWMSY
LETRYASDFERVKKPFSERLTLLDELPPNRQSDQQYLEQIGLISSEREQALNDFAITLSR
QIAEAVNMTPQ