Protein Info for Psyr_3725 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 PF07728: AAA_5" amino acids 206 to 294 (89 residues), 36 bits, see alignment E=6.7e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_3725)

Predicted SEED Role

"Glycerate kinase (EC 2.7.1.31)" in subsystem Allantoin Utilization or D-galactarate, D-glucarate and D-glycerate catabolism or Glycerolipid and Glycerophospholipid Metabolism in Bacteria or Glycine and Serine Utilization or Photorespiration (oxidative C2 cycle) or Serine-glyoxylate cycle (EC 2.7.1.31)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.31

Use Curated BLAST to search for 2.7.1.31

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZQ16 at UniProt or InterPro

Protein Sequence (517 amino acids)

>Psyr_3725 ATPase (Pseudomonas syringae pv. syringae B728a ΔmexB)
MPSLNQIFFGPPGTGKTYATVEATLQILDQPFLAKNLDNRSALKARFDELLAAGDVRFVT
FHQSFSYEDFVEGLRATTDEQGQIRYEVVSGVFKSLCESIASELSGKYRAFKVGERYGTG
YKVIRANDDILELEKPKGKNFGLAMSLLNALADDVSQGVLSVNDLSTGNWEEKLPNSTYD
PYLVKGYRNIVPVLIEHMLSKRNEDFRTAEVAQSERPKVLIIDEINRGNVSRIFGELITL
IEPSKRAGASEALEVTLPYSKERFCIPSNIHLIGTMNTSDRSLAALDIALRRRFTFIEVP
PNPELLEDIEVDGIAIDELLSVMNQRIAVLLDQDHCLGHAYFMPLESDPTLERLAGIFQE
QILPLLQEYFFEDWQRIQWVLNDQRKAPENRFLIQPSQDFSVLFGDAVTVGQNNERWELN
LPAFDNIESYLGVIDHNLSVSAPLEAKSVRTEGVDIRQAANGSIEVYRGGQQVKPAKPHL
REIASKHGLPITSASGIKLNTRSLGRKIIKFLSEQQR