Protein Info for Psyr_3658 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Rhodanese-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 PF17773: UPF0176_N" amino acids 11 to 101 (91 residues), 99.5 bits, see alignment E=1.2e-32 PF00581: Rhodanese" amino acids 121 to 216 (96 residues), 34.9 bits, see alignment E=1.8e-12

Best Hits

Swiss-Prot: 100% identical to Y3658_PSEU2: UPF0176 protein Psyr_3658 (Psyr_3658) from Pseudomonas syringae pv. syringae (strain B728a)

KEGG orthology group: K07146, UPF0176 protein (inferred from 100% identity to psb:Psyr_3658)

Predicted SEED Role

"Rhodanese domain protein UPF0176"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZQ82 at UniProt or InterPro

Protein Sequence (317 amino acids)

>Psyr_3658 Rhodanese-like protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MTQEPMTQPIVVAALYKFVTLSDYVELREPLLQAMVDNGIKGTLLIADEGINGTVSGSRE
GIDGLMAWLKSDPRLIDIDHKESYCDEQPFYRTKVKLKKEIVTLGVEGVDPNKSVGTYVE
PKDWNDLISDPEVLLIDTRNDYEVSIGTFEGAIDPKTTSFREFPEYIKAHFDPAVHKKVA
MFCTGGIRCEKASSYMLGEGFEEVYHLKGGILKYLEEVPEQESHWRGECFVFDNRVTVRH
DLTEGDYDQCHACRTPISAEDRASEHYSPGVSCPHCWDSLSEKTRRSAIDRQKQIELAKA
RNQPHPIGRNYRLPSEA