Protein Info for Psyr_3585 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Sua5/YciO/YrdC/YwlC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 222 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family" amino acids 20 to 213 (194 residues), 200 bits, see alignment E=1.2e-63 PF01300: Sua5_yciO_yrdC" amino acids 35 to 211 (177 residues), 169.3 bits, see alignment E=3e-54

Best Hits

Swiss-Prot: 61% identical to YCIO_SHIFL: Uncharacterized protein YciO (yciO) from Shigella flexneri

KEGG orthology group: K07566, putative translation factor (inferred from 100% identity to psb:Psyr_3585)

Predicted SEED Role

"Hypothetical YciO protein, TsaC/YrdC paralog"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZQF5 at UniProt or InterPro

Protein Sequence (222 amino acids)

>Psyr_3585 Sua5/YciO/YrdC/YwlC (Pseudomonas syringae pv. syringae B728a ΔmexB)
MNSLLPPSEQEVIVSQFFQVHPENPQPRLIKQAAEIIKAGGLVVYPTDSSYALGCQIGDK
SAIERIRRLRQLDDKHNFTLMCCDLSQLGLFAKVDTGAFRALKAHTPGPYTFILNATREV
PRLVLHPKRRTIGLRVPSHPIAQALLEQLGEPLMSVSLIMPGDSVPLSDPYEMRQVLEHQ
VDLIIDGGIGGISASTVINLAEGEPQIVRVGCGDPTPFGERA