Protein Info for Psyr_3361 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: RarD protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 294 transmembrane" amino acids 5 to 22 (18 residues), see Phobius details amino acids 34 to 51 (18 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 102 to 120 (19 residues), see Phobius details amino acids 126 to 143 (18 residues), see Phobius details amino acids 149 to 166 (18 residues), see Phobius details amino acids 178 to 194 (17 residues), see Phobius details amino acids 206 to 227 (22 residues), see Phobius details amino acids 234 to 256 (23 residues), see Phobius details amino acids 266 to 286 (21 residues), see Phobius details PF00892: EamA" amino acids 3 to 139 (137 residues), 29.9 bits, see alignment E=2.9e-11 TIGR00688: protein RarD" amino acids 3 to 252 (250 residues), 187.2 bits, see alignment E=1.9e-59

Best Hits

Swiss-Prot: 44% identical to RARD_PSEAE: Chloramphenicol-sensitive protein RarD (rarD) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K05786, chloramphenicol-sensitive protein RarD (inferred from 100% identity to psb:Psyr_3361)

Predicted SEED Role

"RarD protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZR29 at UniProt or InterPro

Protein Sequence (294 amino acids)

>Psyr_3361 RarD protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MYKGVVLSVLASTLFGVMYFYTSLMTPLDGEEIFGWRMLLTVPCATLFMLVSGDWQRVRE
VAVRLRQQPLLIFALLLSSVLLGAQLLIFMWAPLHGRSLEVSLGYFLLPLSMILTGRVVY
GEHLSYLQKVAAVFAMIGVGHELWRLGSFSWETLLVAGGYPLYFVLRRKLKTDHLGGLWF
DMLLMLPIGLWFIAHGHPQAIQQAPLLYLLIPLLGVISASALVSYILASRLLPFSLFGLL
SYVEPILLVGVALLLGESISRDEWLTYLPIWLAVVVLMIEGAKHMLAQRRRDAS