Protein Info for Psyr_3300 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Conserved hypothetical protein 147

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 PF00781: DAGK_cat" amino acids 6 to 125 (120 residues), 90.1 bits, see alignment E=8.9e-30 TIGR03702: lipid kinase YegS" amino acids 6 to 295 (290 residues), 450.6 bits, see alignment E=2e-139 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family" amino acids 7 to 290 (284 residues), 194.9 bits, see alignment E=1.5e-61 PF19279: YegS_C" amino acids 145 to 286 (142 residues), 47 bits, see alignment E=2.5e-16

Best Hits

Swiss-Prot: 100% identical to YEGS_PSEU2: Probable lipid kinase YegS-like (Psyr_3300) from Pseudomonas syringae pv. syringae (strain B728a)

KEGG orthology group: K07029, (no description) (inferred from 100% identity to psb:Psyr_3300)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZR90 at UniProt or InterPro

Protein Sequence (305 amino acids)

>Psyr_3300 Conserved hypothetical protein 147 (Pseudomonas syringae pv. syringae B728a ΔmexB)
MTQRRAMLILHGKQALNEDVRDAVADKRKQGWELDVRLTWEAGDAQRLVSEALAAGHRHI
VAGGGDGTLRDIAEALALAETSASLTILPLGTANDFARAAGVPLEVSKALQLMDVAPRAV
DLGEVGGKLFLNMATGGFGSQVTANTSEDLKKVLGGAAYLFTGLTRFSELHSAHGELTGP
DFHWRGDLLALGIGNGRQAGGGHELCPTALADDGLLDISILPAPQEVVGTLRSLLEGGLG
IDNMFIRARLPWVELKSTQGLDINLDGEPLSGEDLRFEARPGALHVHLPADSPLLGGAPK
LNRPD