Protein Info for Psyr_2615 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Amino acid adenylation

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5469 PF00668: Condensation" amino acids 109 to 549 (441 residues), 154.8 bits, see alignment E=6.3e-49 amino acids 1187 to 1628 (442 residues), 161.6 bits, see alignment E=5.6e-51 amino acids 2261 to 2701 (441 residues), 151.8 bits, see alignment E=5.4e-48 amino acids 3337 to 3776 (440 residues), 148.8 bits, see alignment E=4.2e-47 amino acids 4423 to 4861 (439 residues), 147.6 bits, see alignment E=1e-46 PF00501: AMP-binding" amino acids 569 to 907 (339 residues), 284.3 bits, see alignment 2.7e-88 amino acids 1648 to 1986 (339 residues), 285.3 bits, see alignment 1.4e-88 amino acids 2721 to 3062 (342 residues), 271.9 bits, see alignment 1.6e-84 amino acids 3796 to 4148 (353 residues), 325.6 bits, see alignment 8e-101 amino acids 4882 to 5221 (340 residues), 292 bits, see alignment 1.2e-90 TIGR01733: amino acid adenylation domain" amino acids 590 to 982 (393 residues), 446 bits, see alignment 3.5e-137 amino acids 1669 to 2061 (393 residues), 446.9 bits, see alignment 1.9e-137 amino acids 2742 to 3137 (396 residues), 426.6 bits, see alignment 2.7e-131 amino acids 3817 to 4223 (407 residues), 469.3 bits, see alignment 2.9e-144 amino acids 4903 to 5296 (394 residues), 456.3 bits, see alignment 2.6e-140 PF13193: AMP-binding_C" amino acids 966 to 1042 (77 residues), 40.9 bits, see alignment (E = 6.7e-14) amino acids 2045 to 2121 (77 residues), 43.3 bits, see alignment (E = 1.1e-14) amino acids 3121 to 3197 (77 residues), 45.2 bits, see alignment (E = 3e-15) amino acids 4207 to 4283 (77 residues), 40.5 bits, see alignment (E = 8.8e-14) amino acids 5280 to 5356 (77 residues), 35 bits, see alignment (E = 4.4e-12) PF00550: PP-binding" amino acids 1071 to 1132 (62 residues), 42.9 bits, see alignment (E = 9.9e-15) amino acids 2150 to 2212 (63 residues), 44.4 bits, see alignment (E = 3.3e-15) amino acids 3227 to 3288 (62 residues), 44 bits, see alignment (E = 4.3e-15) amino acids 4313 to 4374 (62 residues), 40.3 bits, see alignment (E = 6.2e-14) amino acids 5385 to 5445 (61 residues), 44.9 bits, see alignment (E = 2.2e-15)

Best Hits

Predicted SEED Role

"Non-ribosomal peptide synthetase modules, pyoverdine??" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZT68 at UniProt or InterPro

Protein Sequence (5469 amino acids)

>Psyr_2615 Amino acid adenylation (Pseudomonas syringae pv. syringae B728a ΔmexB)
MSMIELLAVLEEKDVQLAVKGDQLVVSGKRQSLMEPAVLALLRENKAALIELINAGEYYS
GKADEVEVPAQAITPGCEHITPAMLPLIKLDQAAIETIVARVPGGVRNVQDIYSLAPLQE
GILYHHIAAEQGDPYVLQAQFTIASRERFDEFTTALQQVIDRHDILRTSVVWEGLAEPVQ
VVWRKADLVLSEIIIDPAAGPASEQLQQRFDPRHYRLDISQAPLLRLAFTHDVANQCWVA
MLLFHHIAIDHAALDLVQHEIHAHLYGQAHTLGEPVPYRNYVAQSRLGVTNKQHEGFFHE
MLGDIDEPTLPFGLHDVRGDGHGIEEAHQTLPAELSQRLRAQARQQGVSAASLHHLAWAQ
VLGRLCGRNDVVFGTVLLGRMQGGNGARRALGMFINTLPLRVAVGEQEVRAGVKATHARL
TTLLGHEHASLALAQRCSGVAAPTPLFSALLNYRHSSAEAVTGQAIQLWEGIEVRGGEER
TNYPLILSLDDLGEGFSLNVQAVAGIGAQRVCGYMQTALESLVHALEQTPHASLNSLPIL
PAAEREQLLVGFNGTKLDYPSQQTIHGLFEAQVERTPQAVAVVYGEQRLTYHELNQQANR
LAHALLKQGVQPDSRVGICVERGAEMVVGLLAILKAGGGYVPLDPAYPVERIAYMLQDSA
PAAVLAQTATQRLLADVSAPVINLDQCNWQDESVQNPKVAGLISAHLAYLIYTSGSTGLP
KGVMIEHRNTVNFLTWAHNAFEGSVLEKTLFSTSLNFDLAVYECFAPLTSGGSIKVVRNV
LELQHGEHDIGLINTVPSALKALLDVNGLPDSVHTVNVAGEALKRNLVENLFEKTGVQRL
CNLYGPSETTTYSSWVAMDREDGFAPHIGKPVGNTQFYLLDEQRQPVPLGVAGEIYIGGA
GVARGYLNRDDLTAERFLTDPFSQQPAARMYRTGDLGRYLPDGNIEYLGRNDDQVKIRGF
RIELGEIDARLTKHPAVHEAVVTAREDIPGDKRLVAYYTLIPRQASVDIDNLRGWLQEQL
PAYMIPVAYVRLDAMPLTPNGKLHRQALPAPESDLLISRGYEAPQGEIETQIAVIWQELL
GVEQVGRHDNFFELGGHSLLAVSLIGRMRHIGLSADVKVLFSQPTLAALASAVGGSDEPG
SDEVTVATNLITPGCQRITPDLLPLIKLTQEQIDLVVACVPGGAANVQDIYPLAPLQEGI
LYHHIAAEQGDPYVLQSQFAFDSRAHLDSFAQALQTVINRHDILRTSMHWESLDEPLQVV
WRHVELSVEDVQLNPDLGDISRQLQERLDPRQMRLDIRQAPLMRLVCTLDTVNQRWLATL
MFHHMILDHTALDQVRHEMQVCLLGQADQLGDSIPYRNYVAQARLGLNEQDHELFFKDML
GDIDEPTLPFGLHDVQGDGSAIDQARLMLDGGLSQRLRVQARQLGVSAASLIHLAFAQML
GRLSGREQVVFGTVLMGRMQSGEGAERALGMFINTLPLRVDLGKQGVRDGVKATHQRLTG
LLGHENASLALAQRCSGVVAPAPLFSALLNYRHSSVAVTDTAMAAWDGMQSLGLDDEERT
NYPLTLNVDDLGEGFSLTALVASSIGAKRVCGYMHTALETLLTALEQTPQASLQGLSILP
AVEREQLLAGFNDTALDYPHEQTIHGMFEAQVERTPEAVAVVHGERRLTYRELNEQANRL
AHALRKQGVEPDSRVGICVERGAEMVVGLLAILKAGGGYVPLDPAYPIERIAYMLQDSAP
AAVLAQTATQGLLADVSVPVINLDLSDWQDGSVQNPQVAGLTSAHLAYLIYTSGSTGLPK
GVMIEHRNTVNFLTWAHTAFDASALEKTLFSTSLNFDLAVYECFAPLTSGGSIKVVKNVL
ELQHGEHDIGLINTVPSALKALLEVDGLPTSVHTVNVAGEALKRSLVESLFENTGVQRLC
NLYGPSETTTYSSWVAMDREDGFAPHIGKPVGNTQFYLLDEQQQLVPLGVAGEIYIGGAG
VARGYLNRDDLTAERFLADPFSQQPAARMYRTGDLGRYSADGNIEYLGRNDDQVKIRGFR
IELGEIDARLAKHPAVHEAVVTAREDVPGDKRLVAYYTLAVGHTALDGDSLRSHLQEKLP
EYMVPAIYVLLEAMPLTPNGKLDRKALPAPDVDALSGRGYEAPEGETETQIAVIWQDLLG
IARIGRHDNFFELGGHSLLAVSLIGRMRQSGLSSDVRALFSQPTLAALAAAVGGGKEIVV
PANLIPERCEYITPDLLPLISLTQAQIDLVVAGVPDGAANVQDIYPLAPLQAGILYHHLS
AEQGDPYVLQSQFAFESQERLDDFVVALRRVIQRHDILRTALAWEGLDEPVQVVWRHASL
MRERLHPDPQGPDVSAQLHQRFDARHYRLDIRQAPMMRLIHAWDEPNQRWLALLLFHHLA
LDHTALDVLRHEMQACLLGQQAQLGEPVPYRNYVAQACLGLSREDHKAFFRDMLGDVDEP
TLPFGLQDVQGDGHAIEEATRVLSAALNLRLRAQARQLGVSVASLAHLAWAQVLGKVSGK
QDVVFGTVLMGRMQGGDGADRALGMFINTLPLRVAVGEQGVRAGVQATHARLTALLGHEH
AFLALAQRCSGISAPTPLFSALLNYRHSAEARVSEQATLAWQGIETLGGEERTNYPLALN
VDDLGDGFSLNVQVSGNVGAMRVCDYMETALEQLLLALEQDPEAPLNSIAILSAAEREQL
LVGFNNTALDYPHQQTVHGLFEAQVRNNPEACAAIHDGVALSYTELNTRANRLARHLLGL
GVQPGDSVAILLERSHDLLASQLAVLKCAAVYVPLDVNAPVERQAFMIEDSQASVLLTLS
QMSLTTSTQRVDLDRLMLNGLDNDDLALAQSSESVAYIMYTSGSTGTPKGVLVPHRAISR
LVINNGYADFNAQDRVAFASNPAFDASTLDVWAPLLNGGCVVVIGQHDLLSPLNFQRLLL
EQSVTVLWMTAGLFHQYASGLGEAFSRLRYLIVGGDVLDPAVIARVLANNAPQHLLNGYG
PTEATTFSATYEIVSVDNGSIPIGKPVGNTRLYVLDSQGLPVPLGVPGELYIGGQGVAKG
YLNRDELSATQFVVDLFSEQIDALMYRTGDLVRWRADGNLEYLGRNDDQVKIRGFRVELG
EIEARLAEHADVREAVVLCRQDVPGDKRLVAYVTAQQSENALDIEHLRNHLQGTLPDYMV
PAAYVQLDALPLTANGKLDRKALPAPDAQSLINRGYEAPQGEVETLLAAIWADVLTVERV
GRHDHFFELGGHSLLAVMLIERMRQVGLSADVRALFSQPTLAALAAAVGSGREIHVPANG
ITADCQRITPDMVPLANLDQVAIDRIVATVPGGIANVQDIYPLAPLQEGILYHHLSAERG
DPYLLQSLFSFDSQEHVDDFARALQFVIQRHDILRTALVWEGLDEPMQVVWRQALLMRES
FDADPHGSDMAAQLHQRFDARHHCLDIRQAPMMRLIHAWDEPNQRWLALLQFHHLVMDHT
TLDVVRYEMQASLLGQEAQLGAAVPYRNYVAQARLGVSQDEHEVFFSDMLGDVDEPTLPF
GLQQVHGDGHGIEEDQLAVGADLSRRLRVQARQLGVSAASLVHLAWARLLGQVSGRDDVV
FGTVLLGRMQGGDGADRALGMFINTLPLRVTLGSRSVCESVREVHDKLTALLGHEHASLA
LAQRCSGVVAPAPLFSALLNYRHSSVAVTDEALTAWNGMQSLGDEERTNYPLTLNVDDQG
EDFLLTVQTVPLIEAARICAYMQQTLNSLVDALEQAPQTPLHAISILPRKERTQLLEQWN
EPGQHYANDTPIHQQFEAHAAERPDAVALVFEAQTLSYGELNARANQVAHRLLALGVRAD
DRVAICVERDPAMIIGLLGILKSGAGYVPLDPAYPPERLAYTLGDSTPVALLSQQSVQQA
LPVSQVPVIYLDDAGLQDESVDNPQISVKPDDLAYVIYTSGSTGLPKGVMVEHRNVARLF
SATEDWFGFNEQDVWALFHSFAFDFSVWEIWGALLHGGRLLIVPQLVSRSPEDFYNLLCN
AAVTVLNQTPSAFRQLITAQGENQQAHSLRQVIFGGEALETAMLKPWYARNVNAGTQLVN
MYGITETTVHVTYYPLQPEDALRVGASPIGTRIPDLQLYLLDTCGEPVPVGVVGELYVGG
AGVARGYLNREALTAERFIDNPFSTVPGTRLYRTGDLGRWLADGTLEYLGRNDEQVKIRG
FRIELGEIEARLAEYPDVRDAVVLCREDVPGDKRLVAYVTTLHPESLLDIETLREHLQET
LPQYMVPAAYVQLNALPLTANGKLDRKALPAPDRSALASRGYEAPEGDTEMAIARIWQDL
LQLEQVGRHDHFFELGGHSLLAVKLIERMRQIDLVADVRVLFSQPTLSALAEAVGGKGAV
EVPANLIPANCERITPDMLPLVSLSQDDIDRVVASVPGGLANVQDIYALAPLQEGILYHH
LAAAEGDPYLQYALFAFDSLERLHSFAQALQGVIARHDILRTAVLWERLDAAVQVVWREA
PLCLDEQLLDPADGDIAEQLLKRLDPRHTRLDIRQAPMLRIGYAQDTVNNRWLGMLLFHH
LVDDATSLRILSSEIEAHMLGQQASLPPSVPYRNYVAQAMLGVSREEHEAFFRDMLGDID
EPTLPFGLQDVQGDGRGIEEARQSLDIDLSRRLRVQARQLGVSSASLYHLAWARVLGAVS
GKEDVVFGTVLLGRLQGGAGSDRALGMFINTLPLRVTLGEQGVRSGLKATHARLSGLLAH
EHASLVLAQRCSGVPASTPLFSALLNYRHVAAEVNQQTFDAWQGIDNLHGEERTNYPLTL
SVNDESVGFSLTVQAIACIDAQRVCAYVQTALENLVSALEQSGEVPLAGLSVLPAAEREQ
LVLGLNATELDYPHEQTIHGLFEAQVERTPQALAVVHGEQRLTYRELNEQANRLANALRK
QGVQPDSRVGICVERGAQMVVGLLAILKAGGGYVPLDPAYPAERISYILQDSAPAAVLVQ
AATRHLLAGVSVQAIDLDDQSAWQDEPVQNPDVEGLNSAHLAYLIYTSGSTGLPKGVMIE
HRNTVNFLTWAHHAFNGSALERTLFSTSLNFDLAVYECFAPLTSGGSINVVKNVLELQHG
EHDIGLVNTVPSALKALLEIDGLPESVHTVNVAGEALKRSLVENLFEKTGVQRLCNLYGP
SETTTYSSWVAMDREDGFAAHIGRPVGNTRFYLLDEQQQLVPRGVPGEIYIGGAGVARGY
LNRDDLTAERFLTDPFSLTPGARMYRTGDLGRYLPDGNIEYLGRNDDQVKIRGFRIELGE
IDACLAKHPAVHEAVVMAREDVPGEIRLVAYFTPTDPAVITDSGSLRTHLQGLLPDYMLP
AAYMPLDALPLTPNGKLDRNALPAPDSSAFASRAYEAPVGEVEIKLAALWAELLNVEKVG
RHDHFFELGGHSLLAVTLIERMRQADLEADVRVLFGHPTLLQVAASVGQVKRVEVPQTKI
PMLNRKRRI